BAC Information

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BAC

Clone NameB6Ng01-024E04
ChromosomeY (Build37)
Map Location 1,412,976 - 1,517,613
singlet/doubletdoublet
Overlap geneZfy2
Upstream geneUty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1
Downstream geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024E04.bB6Ng01-024E04.g
ACCDH855953DH855954
length1,0821,122
definitionDH855953|Mus musculus domesticus DNA, BAC clone: B6Ng01-024E04, 5' end.DH855954|Mus musculus domesticus DNA, BAC clone: B6Ng01-024E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(1,412,976 - 1,413,770)(1,516,487 - 1,517,613)
sequence
gaattctttcccttactctcttttcctttcttacttcatttaattcccat
tcaatttccccatcaccttgtaattatatgcttctttttctatattaaaa
gcttcttccttcctcactattccattatagcttacctatcaaaggtgtaa
aaattactattcatatacaaaaattgcataccgtatttgttttaggatgt
tatcttgcttagggttggctttttgtagttccatttatttatatttcatt
catttcatgcttacttttatgcagcaattaaaatggacaactgtctttct
ctctggtgggatgtagagccctttgggaatatgccaagagtggtataaac
agatcttgaggtagatttactcccagttttctgaggaacaaccgcagatt
tctatagtggctgtctaactttgcactctcactaccaatggatgaatgtt
cgtcttacttcacatcctcatcagcatgagctattactttttttagtgat
cttaaattctgactgatgcaagatgaaacctctaaggagtttagtttata
ttcccctacaactaaagttgttgtttatttacacgtttttcaaccatttg
ttttcccttttgaaaatactattcagacctacaccccattttaaattaaa
aaaaaaaacctttttattgattctttgtgaatttcacatcatacacccga
atcccaccaatcatcttcttgtccttttgtattcaccattcacctctcct
tcaaaacaaaaacaaaaacaaacaaacaaaacctaccaaatatatatata
tacacacatatggacagtcagacagaaagacagacagacagattggcatc
ttctggtccacacctgcaatcctagatcttcactccacttcctggaccac
agctcttgtgtccctgaagaccttcagccaacctggtaaaccaggccaag
tcatcagtaccaccagttctattgcatctttggagggctgtggactacct
ggcacaacgaggtgaggcactggtggccccattttcaacctggaatgggc
cttgaagacaatctgaactggctgaattttga
gaattccacacccctaagcccttcaccccataaaaacccctagctttcaa
gcctcatggctgacatccattatcccctgtgtgagatgcatgtcggtcta
gagttacatcattaaatgacctcatgtaattacagcaagatgggtccttg
tgtttccttgggtgctctctcactcaagagactagagtgggggtccctga
aagggagccttacacttccacaaaatgagtgcccttctcctcacatgagg
aacaagatggcgatggtccagctggaagcaaagggaggaacttgatctat
gcaaatcatgaaccatttatgacacactcagccaacaggaatgaatatgc
aagagtcaggcagagctttaatgtactgttgggagctcagctctctggga
caatctagctcctcatggaaatggatattgctcttcctggaagtatgaaa
tctcaggaaaatctgctggaaaatgcttgcaatacaggcaggtaagagaa
cgtgactgccgaacacaatatagagcatgctttgaagaaaccgtccaaaa
gctctttgtcacttgcttgtgctgtgggatctttcttctacaacccagca
aataatacataggaatgctgcactagactgtgttgcatctcttctaaagc
tgaaaacatcagctataggggccagaatggcttcttaagtgagacttgta
cctttagttgagaacctgagagaatgtacacctgccattatgcaacggga
gaataacagattcctacactctaggcacaaaatgaaaaacaatcattgtt
gtaaagttgatgtgttgttgcacaaggcatgcttgaatacataagtagat
ataagggaaacagagaaaggcaggagacgttcaattttaatgtagtgaaa
agagaggtgtttgttcttgtttgattgggtttatttttcaatttatgtaa
aatagtcctgttggggctggcctctggctctcatgtctgggttcaagcct
gggagcatctcggaactgggaagagaagagggcatctaggtgggttaaag
aaataaatgtaacaaagaccagtagttgctcagtccaattttaatgacgg
acatgccttataggaaggggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1412976_1413770
seq2: B6Ng01-024E04.b_336_1125

seq1  GTCTTTCTCTCTGGTGGGATGTAGAGCCCTTTGGGAATATGCCAAGAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCTCTCTGGTGGGATGTAGAGCCCTTTGGGAATATGCCAAGAGTG  50

seq1  GTATAAACAGATCTTGAGGTAGATTTACTCCCAGTTTTCTGAGGAACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAACAGATCTTGAGGTAGATTTACTCCCAGTTTTCTGAGGAACAAC  100

seq1  CGCAGATTTCTATAGTGGCTGTCTAACTTTGCACTCTCACTACCAATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGATTTCTATAGTGGCTGTCTAACTTTGCACTCTCACTACCAATGGA  150

seq1  TGAATGTTCGTCTTACTTCACATCCTCATCAGCATGAGCTATTACTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTTCGTCTTACTTCACATCCTCATCAGCATGAGCTATTACTTTTT  200

seq1  TTAGTGATCTTAAATTCTGACTGATGCAAGATGAAACCTCTAAGGAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGATCTTAAATTCTGACTGATGCAAGATGAAACCTCTAAGGAGTTT  250

seq1  AGTTTATATTCCCCTACAACTAAAGTTGTTGTTTATTTACACGTTTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATATTCCCCTACAACTAAAGTTGTTGTTTATTTACACGTTTTTCA  300

seq1  ACCATTTGTTTTCCCTTTTGAAAATACTATTCAGACCTACACCCCATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTGTTTTCCCTTTTGAAAATACTATTCAGACCTACACCCCATTTT  350

seq1  AAATTAAAAAAAAAAACCTTTTTATTGATTCTTTGTGAATTTCACATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAAAAAAAAACCTTTTTATTGATTCTTTGTGAATTTCACATCAT  400

seq1  ACACCCGAATCCCACCAATCATCTTCTTGTCCTTTTGTATTCACCATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCGAATCCCACCAATCATCTTCTTGTCCTTTTGTATTCACCATTCA  450

seq1  CCTCTCCTTCAAAACAAAAACAAAAACAAACAAACAAAACCTACCAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTTCAAAACAAAAACAAAAACAAACAAACAAAACCTACCAAATA  500

seq1  TATATATATACACACATATGGACAGTCAGACAGAAAGACAGACAGACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATACACACATATGGACAGTCAGACAGAAAGACAGACAGACAGA  550

seq1  TTGGCATCTTCTGGTCCACACCTGCAATCCTAGATCTTCACTCCACTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATCTTCTGGTCCACACCTGCAATCCTAGATCTTCACTCCACTTCC  600

seq1  TGGACCACAGCTCTTGTGTCCCTGAAGACCTTCAGCCAACCTGGTAAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCACAGCTCTTGTGTCCCTGAAGACCTTCAGCCAACCTGGTAAACC  650

seq1  AGGCCAAAGTCATCAGGTACCACCAGTTCTATTGCATCTTTGGAGGGCTG  700
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGGCC-AAGTCATCA-GTACCACCAGTTCTATTGCATCTTTGGAGGGCTG  698

seq1  T-GACTACCTGGCACAACGAGGTGAGGCACTGGTGGGCCCCATTTTCACC  749
      | |||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  TGGACTACCTGGCACAACGAGGTGAGGCACTGGT-GGCCCCATTTTCAAC  747

seq1  CTGGATTGGGCCTTGAGGACAAACTTGAACCTGGCTGGAGTTTTGA  795
      ||||| |||||||||| ||||| | |||| |||||| || ||||||
seq2  CTGGAATGGGCCTTGAAGACAATC-TGAA-CTGGCT-GAATTTTGA  790

seq1: chrY_1516487_1517613
seq2: B6Ng01-024E04.g_67_1188 (reverse)

seq1  CTCCCCTCTCCTTTATAAAGCATGTCCGTCATTAAAAATTTGAACCTTGA  50
      ||||||| |||  ||||| ||||||||||||||||||  ||| ||  |||
seq2  CTCCCCT-TCC--TATAAGGCATGTCCGTCATTAAAA--TTGGAC--TGA  43

seq1  GCAAACTAACTTGTCTTTGTTCCA-TTATTTCTCT-ACCCACCTAGATTC  98
      || |||| ||| ||||||||| || |||||||| | |||||||||||| |
seq2  GC-AACT-ACTGGTCTTTGTTACATTTATTTCTTTAACCCACCTAGATGC  91

seq1  CCTCTTCTCTT-CCAGTTCCGAGATGCCTCCCAGGCTTGAACCCAGACAT  147
      ||||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  CCTCTTCTCTTCCCAGTTCCGAGATG-CTCCCAGGCTTGAACCCAGACAT  140

seq1  GAGAGCCAGAGGCCAGCCCCAACAGGACTATTTTACATAAATGGAAAAAT  197
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAGAGCCAGAGGCCAGCCCCAACAGGACTATTTTACATAAATTGAAAAAT  190

seq1  AAA-CCAATCAAACAAGAACAAACACCTCTCTTTTCACTACATTAAAATT  246
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAATCAAACAAGAACAAACACCTCTCTTTTCACTACATTAAAATT  240

seq1  GAACGTCTCCTGCC-TTCTCTGTTTCCCTTATATCTACTTATGTATTCAA  295
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAACGTCTCCTGCCTTTCTCTGTTTCCCTTATATCTACTTATGTATTCAA  290

seq1  GCATGCCTTGTGCAACAACACATCAACTTTACAACAATGATTGTTTTTCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCTTGTGCAACAACACATCAACTTTACAACAATGATTGTTTTTCA  340

seq1  TTTTGTGCCTAGAGTGTAGGAATCTGTTATTCTCCCGTTGCATAATGGCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGCCTAGAGTGTAGGAATCTGTTATTCTCCCGTTGCATAATGGCA  390

seq1  GGTGTACATTCTCTCAGGTTCTCAACTAAAGGTACAAGTCTCACTTAAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTACATTCTCTCAGGTTCTCAACTAAAGGTACAAGTCTCACTTAAGA  440

seq1  AGCCATTCTGGCCCCTATAGCTGATGTTTTCAGCTTTAGAAGAGATGCAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTCTGGCCCCTATAGCTGATGTTTTCAGCTTTAGAAGAGATGCAA  490

seq1  CACAGTCTAGTGCAGCATTCCTATGTATTATTTGCTGGGTTGTAGAAGAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCTAGTGCAGCATTCCTATGTATTATTTGCTGGGTTGTAGAAGAA  540

seq1  AGATCCCACAGCACAAGCAAGTGACAAAGAGCTTTTGGACGGTTTCTTCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCACAGCACAAGCAAGTGACAAAGAGCTTTTGGACGGTTTCTTCA  590

seq1  AAGCATGCTCTATATTGTGTTCGGCAGTCACGTTCTCTTACCTGCCTGTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGCTCTATATTGTGTTCGGCAGTCACGTTCTCTTACCTGCCTGTA  640

seq1  TTGCAAGCATTTTCCAGCAGATTTTCCTGAGATTTCATACTTCCAGGAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGCATTTTCCAGCAGATTTTCCTGAGATTTCATACTTCCAGGAAG  690

seq1  AGCAATATCCATTTCCATGAGGAGCTAGATTGTCCCAGAGAGCTGAGCTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATATCCATTTCCATGAGGAGCTAGATTGTCCCAGAGAGCTGAGCTC  740

seq1  CCAACAGTACATTAAAGCTCTGCCTGACTCTTGCATATTCATTCCTGTTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGTACATTAAAGCTCTGCCTGACTCTTGCATATTCATTCCTGTTG  790

seq1  GCTGAGTGTGTCATAAATGGTTCATGATTTGCATAGATCAAGTTCCTCCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTGTGTCATAAATGGTTCATGATTTGCATAGATCAAGTTCCTCCC  840

seq1  TTTGCTTCCAGCTGGACCATCGCCATCTTGTTCCTCATGTGAGGAGAAGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCCAGCTGGACCATCGCCATCTTGTTCCTCATGTGAGGAGAAGG  890

seq1  GCACTCATTTTGTGGAAGTGTAAGGCTCCCTTTCAGGGACCCCCACTCTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCATTTTGTGGAAGTGTAAGGCTCCCTTTCAGGGACCCCCACTCTA  940

seq1  GTCTCTTGAGTGAGAGAGCACCCAAGGAAACACAAGGACCCATCTTGCTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTGAGTGAGAGAGCACCCAAGGAAACACAAGGACCCATCTTGCTG  990

seq1  TAATTACATGAGGTCATTTAATGATGTAACTCTAGACCGACATGCATCTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACATGAGGTCATTTAATGATGTAACTCTAGACCGACATGCATCTC  1040

seq1  ACACAGGGGATAATGGATGTCAGCCATGAGGCTTGAAAGCTAGGGGTTTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGGATAATGGATGTCAGCCATGAGGCTTGAAAGCTAGGGGTTTT  1090

seq1  TATGGGGTGAAGGGCTTAGGGGTGTGGAATTC  1127
      ||||||||||||||||||||||||||||||||
seq2  TATGGGGTGAAGGGCTTAGGGGTGTGGAATTC  1122