BAC Information

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BAC

Clone NameB6Ng01-024F12
ChromosomeY (Build37)
Map Location 1,120,580 - 1,120,805
singlet/doubletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024F12.bB6Ng01-024F12.g
ACCDH856006DH856007
length7821,161
definitionDH856006|Mus musculus domesticus DNA, BAC clone: B6Ng01-024F12, 5' end.DH856007|Mus musculus domesticus DNA, BAC clone: B6Ng01-024F12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaatccaaggtatgcttagcacagatctcagttttcctttttgt
gaactaggaaagtatttcttcatttagaaaactatttaacatcagctagt
aattcttttctctccatacaagtagtatcaattgttaagcaagaacagag
ctgaacaaggagtttcatgactgtagactcagcactgtggaagttgttaa
gaggatcatttcaaatctgaggctagcctgggctatagagcatttttgaa
gatgttcaccttagaagccccttctttttattttttaaatttattttttt
attaggtattttcctcgtttacattttcaatgctatcccaaaagtccccc
atacccacccccccaaccccctacccacccactccccctttttggccctg
gggttcccctgtactggggcatataaagtttgcaagtccaatgggcctct
ctttgcagtgatggccgactaggccatcttttgatacatatgcagctaga
gacaagagctccggggtactggttagttcacattgttgttccacctatag
ggttgcagctccctttagctccttgggtaatttctctagctcctccattg
ggggccgtgtgatccatccaatagctgactgtgaggatccacttctgtgt
ttgctaggccccggcatagtctcacaagagacagctatatctgggtcctt
tcagtgaaatcttgctagtgtatgcaatggtgtcagcgtttggaagctga
ttatgggatggatccctgcatatggcatcact
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcatggatgtggagaaagaggaatactcctccattgttggt
gggagtgcaggcttgtacaaacactctggaaatcagtctggcagttccac
agaaaattggacatagtactaccggaggatccagcaatacctctcctggg
catatatccagaagatgccccaactggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctagcca
aatggatggacctggagggcatcatcctgagtgaggtaacacattcacaa
agaaactcacacaatatgtactcactgataagtggatattagccccaaac
ctaggatacccaagatataagatataatttgctaaacacatgaaactcaa
gaagaatgaagactgaagtgtggaccctatgcccctccttagatttggga
acaaaacacccatggaaggagttacagagacaaagtttggagctgagatg
aaaggatggaccatgtagagactgccatatcccagggatccaccccataa
tcagcatctaagcgctgacaccattgcatacactagcaagattttattga
aaaggacccagatgtagctgtctcttgtgagactatgctggggcctagca
aacacagaagtggatgctcacagtcagctatggatagatcacagggctcc
caatgaagagctagagaaagtgccaggagcttaaaggatctgcaccctat
agtagaaaacattatgaactacagtaccggagctctttgactctagctgc
tatatatcaaagatgctatgcggcatcctcgtagagaaggccattgatct
gctactctttattgcccagtaccggaaaaccaggccataaataggagaag
tgggtgagtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120580_1120805
seq2: B6Ng01-024F12.b_317_542

seq1  TTTTAATTTTTT--TTTCCATTTTTTATTAGGTATTTAACTCATTTACAT  48
      |||| |||||||   ||   |||||||||||||||||  ||| |||||||
seq2  TTTTTATTTTTTAAATTTATTTTTTTATTAGGTATTTTCCTCGTTTACAT  50

seq1  TTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCT  98
      || ||||||||| |||||||||||||||| |||||  ||||||  |||||
seq2  TTTCAATGCTATCCCAAAAGTCCCCCATACCCACC--CCCCCAACCCCCT  98

seq1  GCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCAT  148
       ||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  ACCCACCCACTCCCCCTTTTTGGCCCTGGGGTTCCCCTGTACTGGGGCAT  148

seq1  ATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAG  198
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGATGGCCGACTAG  198

seq1  GCCATCTTTTGATATATATGCAGCTAGA  226
      |||||||||||||| |||||||||||||
seq2  GCCATCTTTTGATACATATGCAGCTAGA  226