BAC Information

Click to search

BAC

Clone NameB6Ng01-024N22
ChromosomeX (Build37)Y (Build37)
Map Location 123,307,655 - 123,308,5601,544,546 - 1,544,641
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG665611, EG626048, LOC100040410, LOC100039903, LOC665679
Downstream gene4932411N23Rik, Gm381, LOC100040472, Gm382, 4921511C20Rik, 4930412D23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024N22.bB6Ng01-024N22.g
ACCDH856378DH856379
length902105
definitionDH856378|Mus musculus domesticus DNA, BAC clone: B6Ng01-024N22, 5' end.DH856379|Mus musculus domesticus DNA, BAC clone: B6Ng01-024N22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(123,307,655 - 123,308,560)(1,544,546 - 1,544,641)
sequence
gaattcttttgaaaccctactggtagaaaggaaagcgtattaaacatatt
tttctaataggagaaaattgagagaaacattatttgatgaaattcgagat
gctctaatacattatttctgataaagatgtaagaaaactacaagaaaaaa
tggggttaaaatggatgaaattgatggaaaaacaggctgtacaaatggaa
aacttataaaattcatgttcactatttgcaaaagcagagatcatcatatt
acgataaaataaaagattatattcgaatgtatttgtgacaaaattgaaaa
aaatattttaaaaatgtgttaaaatggaaatattagagtgaataaacacc
gggtaaagagaaaaacgtagaaaacacattctttttcattagagaaaaag
gaaagaaacattttctaataaattttgagatgttcttatacactatttct
gataaaagtgaaaactgtacagaaaaatgtggttaaaatggaggaaattg
attgaaaaacgattggtcaaatcgaaaatggagaaaactcatgttcacta
taagagaaagctgaggtcatcattgtaagataggggagtgcgagggaggg
aatgggggacttttgcgatagaattagaaacgtaattgaggaaaatacct
aattttaaaaaattacaagatgttattccaatgtgtttttgagaaaattg
acaaaatttataactcttcgtattataaaagaacaattcggtggaataac
ctgcctgagaaaagaaaacctacaaacatattttgcctaatactgaatat
ggagagaatcattttctgatagaattcgagatgatcttaaacgacgactg
gataatgagccacacatccatggtacctggatctacggcagaatttgata
ga
gaattccccaagattgaatctccgagtttaaggaacacacatttaatctg
ggctacgcctttcatctgggattaaaggtgtggtggaacacacctttaat
ccggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_123307655_123308560
seq2: B6Ng01-024N22.b_41_942

seq1  GAATTCTTTGGAAAACACTACTGGTAGAAAGGAAAGCGTATTAAACATGT  50
      ||||||||| | |||| ||||||||||||||||||||||||||||||| |
seq2  GAATTCTTTTG-AAACCCTACTGGTAGAAAGGAAAGCGTATTAAACATAT  49

seq1  TTTTCTAATAGGAGAAAATTGAGAGAAACATTATTTGATGAAATTCGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAATAGGAGAAAATTGAGAGAAACATTATTTGATGAAATTCGAGA  99

seq1  TGCTCTAATACATTATTTCTGATAAAAATGTAAGAAAACTACAGGAAAAA  150
      |||||||||||||||||||||||||| |||||||||||||||| ||||||
seq2  TGCTCTAATACATTATTTCTGATAAAGATGTAAGAAAACTACAAGAAAAA  149

seq1  AAAGGGTTAAAATGGATGAAATTGATGGAAAAACAGGCTGTACAAATGGA  200
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTTAAAATGGATGAAATTGATGGAAAAACAGGCTGTACAAATGGA  199

seq1  AAACTTAGAAAATTCATCTTCACTATTTGCAAAAGCAGAGATCATCATAT  250
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  AAACTTATAAAATTCATGTTCACTATTTGCAAAAGCAGAGATCATCATAT  249

seq1  TACGATAAAATAAAAGATTATATTCGAATGTATTTGTGACAAAATTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  TACGATAAAATAAAAGATTATATTCGAATGTATTTGTGACAAAATT-GAA  298

seq1  AAAAATATTTTAAAAATGTGTTAAAATGGAAATATTAGAGTGAAAAAACA  350
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAAAATATTTTAAAAATGTGTTAAAATGGAAATATTAGAGTGAATAAACA  348

seq1  CCGGGTAAAGAGGAAAACGTAGAAAACATATTCTTTTCCATTAGACAAAA  400
      |||||||||||| ||||||||||||||| |||||||| ||||||| ||||
seq2  CCGGGTAAAGAGAAAAACGTAGAAAACACATTCTTTTTCATTAGAGAAAA  398

seq1  AGGAGAGAAACATTTTCTGATAAATTTCGAGATGTTCTTATACACTATTT  450
      |||| ||||||||||||| |||||||| ||||||||||||||||||||||
seq2  AGGAAAGAAACATTTTCTAATAAATTTTGAGATGTTCTTATACACTATTT  448

seq1  CTGATAAAAGTGAAAACTGTACAGAAAAATGTGGTTAAAATGGAGGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAAAGTGAAAACTGTACAGAAAAATGTGGTTAAAATGGAGGAAAT  498

seq1  TGATTGAAAAACGATTGGTCAAATCGAAAATGGAGAAAACTCATGTTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGAAAAACGATTGGTCAAATCGAAAATGGAGAAAACTCATGTTCAC  548

seq1  TATGAGAGAAAGCTGAGGTCATCAATGTAAGATAGGGGAGTGCGAGGGAG  600
      ||| |||||||||||||||||||| |||||||||||||||||||||||||
seq2  TATAAGAGAAAGCTGAGGTCATCATTGTAAGATAGGGGAGTGCGAGGGAG  598

seq1  GGTATGGGGGACTTTTGGGATAGAATTGGAAACGTAATTGAGGAAAATAC  650
      || |||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  GGAATGGGGGACTTTTGCGATAGAATTAGAAACGTAATTGAGGAAAATAC  648

seq1  CCAATTTTAAAAAATTACAAGATGTTATTCAAATGTATTTTTGAGAAAAT  700
      | |||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  CTAATTTTAAAAAATTACAAGATGTTATTCCAATGTGTTTTTGAGAAAAT  698

seq1  TGACAAAATTTATAGAAAAATGTTTTATAATGGAAGAATTCGATGGAAAA  750
      ||||||||||||||       || ||||||  ||| |||||| ||||| |
seq2  TGACAAAATTTATAACTCTTCGTATTATAAAAGAACAATTCGGTGGAATA  748

seq1  ACCTTCAGTTAGAAAGGAAAACAAAGAAAACATATTTTTTCTAATAGAGA  800
      |||| |  | ||||| ||||||  |  |||||||||||  ||||||  ||
seq2  ACCTGC-CTGAGAAAAGAAAACCTA-CAAACATATTTTGCCTAATACTGA  796

seq1  AAATGGAGAGAATCATTTTCTGAGAAAAATCGAGATATTCTTAAACAGCA  850
      | ||||||||||||||||||||| | || |||||||  ||||||||  | 
seq2  ATATGGAGAGAATCATTTTCTGATAGAATTCGAGATGATCTTAAACGACG  846

seq1  TTTGGATAAAAAGAAAAAAATTACAAAAACGTGGAAAAATGGAGGAATTT  900
        |||||||  ||  | | ||       || ||||   | ||  ||||||
seq2  ACTGGATAATGAGCCACACATCCATGGTACCTGGATCTACGGCAGAATTT  896

seq1  GATAGA  906
      ||||||
seq2  GATAGA  902

seq1: chrY_1544546_1544641
seq2: B6Ng01-024N22.g_76_171 (reverse)

seq1  CCCAGATTAAAGGTGTGTTCCACCACACCTTTAATCCCAGATGAAAGGTG  50
      ||| |||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCCGGATTAAAGGTGTGTTCCACCACACCTTTAATCCCAGATGAAAGGCG  50

seq1  TAGCCCAGATTAAAGGTGTGTTCCTTAAACTCGGAGATTCAATCTT  96
      |||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAGCCCAGATTAAATGTGTGTTCCTTAAACTCGGAGATTCAATCTT  96