BAC Information

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BAC

Clone NameB6Ng01-025C14
Chromosome14 (Build37)Y (Build37)
Map Location 35,317,906 - 35,318,9611,120,566 - 1,120,978
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneFrmpd2, LOC100040093, Ptpn20, Gdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, 3110001K24Rik, LOC623142, Glud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2, Bmpr1a
Downstream gene9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal, LOC100041341, Grid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025C14.bB6Ng01-025C14.g
ACCDH856591DH856592
length1,043891
definitionDH856591|Mus musculus domesticus DNA, BAC clone: B6Ng01-025C14, 5' end.DH856592|Mus musculus domesticus DNA, BAC clone: B6Ng01-025C14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,317,906 - 35,318,961)(1,120,566 - 1,120,978)
sequence
gaattcctttaagtaggttaatagaagggactagaaatgagccttttcct
ctgggcagtcagttttatcccaggttctaaaactggcatttgttgcctaa
gcaaaccaggaagcattcctacctgatactgatagctcccagctcctcca
caacactttttttttttttttttttttggttttttgagacaaggtttctc
tgtgtagctctggctgtcctggaactcactttgtagaccaggctggcctc
gaactcagaaatccgcctgcctctgcctcccgagtgctgggattaaaggc
gtgcgccacaatgcgccggctacctttgttttatttttttgaaactgggt
ttctctgtgtagccctggctgtctaggaacttgctctgtagaccaagctg
gcctctgcctcccaagtgctggaactgaaggcctttgctgtcaaccaggc
ttcagaacactttctaatcacctattctatattaatactccaggcgctcg
ttttctttatgttgctttttattatccgaatttatttagtttatgaacag
aacccctccaccctttagggtttaaactccaggagaagactggccagtgt
gttctccactctcctccgaccttagctcctggcttgcagtactacttgtt
agatacttgctgcccggtgtctgttaagtgagtgagacagataagcatgg
atttcctctgagctcttctgaaccctgtcactatgaccctttcagtgtta
gaaaggtgagcatgactatgtgaaaaaggtgaggatcggccaaggaaact
gaggattacgtcatctgtagtgaaatgggacttctggcttcagggaccca
agtcaatagattaatccgagttaatcccgccccaagtcattttcctgttg
taagatttatgaggcaaaaggcagcataagtcattgtgggtatagagata
gactctggaaagaccatggaaggatgcccgtggcagtgacacttagttct
gcaacccagattaaatggaaaatgtgttatggggagtagaggg
gaattcatataaatgaaataataaataattcttttataaaaaaaaaaggg
agagggagccaggcagtggtggcacatgcctttaatcccagcacttggga
ggcagggtcaggcgcatttctgagttcgaggccagcctggtctacagagt
gagttccaggacagccaggactacatagagaaaccctgtctcgaaaaaaa
aaatggggggagggggctggagagcactgactgctcttccagaagtcctg
agttcaattcccagcaaccacgtggtggctcacaaccatctgtaatggga
tccaatgccctcttcttttatttttttttttttctacaatcttggatttt
ttttttccatttttttatggtctttttttaattaggtattttcctcgttt
acatttccaatgctatcccaaaagtcccccatacccacccccacaatccc
ctacccacccactccccctttttggccctggcgttcccctgtactggggc
atataaagtttgcaagtccaatgggcctctcttttgcagtgatggccgac
taggccatcttttgatacatatgcagctagagacaagagctccggggtac
tggttagttcatattgttgttccaccgatagggttgcagttccctttagc
tccttggatactttctctagctcctccattgggggccgtgtgacccatcc
aataactgactgtgatcatccacttctgtgtttgctaggccccggcatag
tctcccaatgccctcttctgatgtgtctggaaaacagctacggtgtactc
atataaataaaataaataaatgcttgcttttgagcagctattggaatcac
tatttaaaaaaaaaaaagaaagaaagaaaaggaaaaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_35317906_35318961
seq2: B6Ng01-025C14.b_47_1089

seq1  GAATTCCTTTAAGTAGGTTAATAGAAGGGACTAGAAATGAGCCTTTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTAAGTAGGTTAATAGAAGGGACTAGAAATGAGCCTTTTCCT  50

seq1  CTGGGCAGTCAGTTTTATCCCAGGTTCTAAAACTGGCATTTGTTGCCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGTCAGTTTTATCCCAGGTTCTAAAACTGGCATTTGTTGCCTAA  100

seq1  GCAAACCAGGAAGCATTCCTACCTGATACTGATAGCTCCCAGCTCCTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCAGGAAGCATTCCTACCTGATACTGATAGCTCCCAGCTCCTCCA  150

seq1  CAACACTTTTTTTTTTTTTTTTTTTTTGGTTTTTTGAGACAAGGTTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTTTTTTTTTTTTTTTTTTTTTGGTTTTTTGAGACAAGGTTTCTC  200

seq1  TGTGTAGCTCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCTCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTC  250

seq1  GAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGC  300

seq1  GTGCGCCACAATGCGCCGGCTACCTTTGTTTTATTTTTTTGAAACTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGCCACAATGCGCCGGCTACCTTTGTTTTATTTTTTTGAAACTGGGT  350

seq1  TTCTCTGTGTAGCCCTGGCTGTCTAGGAACTTGCTCTGTAGACCAAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGTAGCCCTGGCTGTCTAGGAACTTGCTCTGTAGACCAAGCTG  400

seq1  GCCTCTGCCTCCCAAGTGCTGGAACTGAAGGCCTTTGCTGTCAACCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTCCCAAGTGCTGGAACTGAAGGCCTTTGCTGTCAACCAGGC  450

seq1  TTCAGAACACTTTCTAATCACCTATTCTATATTAATACTCCAGGCGCTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAACACTTTCTAATCACCTATTCTATATTAATACTCCAGGCGCTCG  500

seq1  TTTTCTTTATGTTGCTTTTTATTATCCGAATTTATTTAGTTTATGAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTATGTTGCTTTTTATTATCCGAATTTATTTAGTTTATGAACAG  550

seq1  AACCCCTCCACCCTTTAGGGTTTAAACTCCAGGAGAAGACTGGCCAGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTCCACCCTTTAGGGTTTAAACTCCAGGAGAAGACTGGCCAGTGT  600

seq1  GTTCTCCACTCTCCTCCGACCTTAGCTCCTGGCTTGCAGTACTACTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCACTCTCCTCCGACCTTAGCTCCTGGCTTGCAGTACTACTTGTT  650

seq1  AGATACTTGCTGCCCGGTGTCTGTTAAGTGAGTGAGACAGATAAGCATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTTGCTGCCCGGTGTCTGTTAAGTGAGTGAGACAGATAAGCATGG  700

seq1  ATTTCCTCTGAGCTCTTCTGAACCCTGTCACTATGACCCTTTCAGTGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTCTGAGCTCTTCTGAACCCTGTCACTATGACCCTTTCAGTGTTA  750

seq1  G-AAGGTGAGCATGACTATGTGAAAAGGGTGAGGATCGGCCAAGGAAACT  799
      | |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAAAGGTGAGCATGACTATGTGAAAAAGGTGAGGATCGGCCAAGGAAACT  800

seq1  GAGGATTACGTCATCTGTAGTGAAATAGGGACTTCTGCCTTCAGGGACCC  849
      |||||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  GAGGATTACGTCATCTGTAGTGAAAT-GGGACTTCTGGCTTCAGGGACCC  849

seq1  AAGTTCAATAGATTAATCCGAGTTAAT-CCGCCCCAAGTCATTTTCCTGT  898
      ||| ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAG-TCAATAGATTAATCCGAGTTAATCCCGCCCCAAGTCATTTTCCTGT  898

seq1  TGTAAAGATTTTATGAGGCAAAAGGCAGCAGTAAGTCATTGTGGGTATAG  948
      ||| |||| ||||||||||||||||||||| |||||||||||||||||||
seq2  TGT-AAGA-TTTATGAGGCAAAAGGCAGCA-TAAGTCATTGTGGGTATAG  945

seq1  AGATAAGAGCTCAGGAAAGACCAGTGGAGGGATGCCCGTGGCAAGTGACA  998
      |||| ||| ||| |||||||||| |||| ||||||||||||| |||||||
seq2  AGAT-AGA-CTCTGGAAAGACCA-TGGAAGGATGCCCGTGGC-AGTGACA  991

seq1  CTTAGGTTTGCTGCAAACCCAGTATTAAATGGATAAATGTGTTATGGGGA  1048
      ||||| | |||    ||||||| |||||||||| ||||||||||||||||
seq2  CTTAGTTCTGC----AACCCAG-ATTAAATGGA-AAATGTGTTATGGGGA  1035

seq1  GTAGAGGG  1056
      ||||||||
seq2  GTAGAGGG  1043

seq1: chrY_1120566_1120978
seq2: B6Ng01-025C14.g_381_821

seq1  TCTTTTTTTTTTTTTTTT--------------AATTTTTTTTTCCATTTT  36
      |||||| |||||||||||              | ||||||||||||||||
seq2  TCTTTTATTTTTTTTTTTTTCTACAATCTTGGATTTTTTTTTTCCATTTT  50

seq1  TT---------------ATTAGGTATTTAACTCATTTACATTTCCAATGC  71
      ||               |||||||||||  ||| ||||||||||||||||
seq2  TTTATGGTCTTTTTTTAATTAGGTATTTTCCTCGTTTACATTTCCAATGC  100

seq1  TATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCA  121
      ||| |||||||||||||||| |||||  ||| || |||||| ||||||||
seq2  TATCCCAAAAGTCCCCCATACCCACC--CCCACAATCCCCTACCCACCCA  148

seq1  CTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTT  171
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  CTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTT  198

seq1  GCAAGTCCAATGGGCCTCTC-TTTCCAGTGATGGCCGACTAGGCCATCTT  220
      |||||||||||||||||||| ||| |||||||||||||||||||||||||
seq2  GCAAGTCCAATGGGCCTCTCTTTTGCAGTGATGGCCGACTAGGCCATCTT  248

seq1  TTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCA  270
      |||||| |||||||||||||| |||||||||||||||||||||||| |||
seq2  TTGATACATATGCAGCTAGAGACAAGAGCTCCGGGGTACTGGTTAGTTCA  298

seq1  TAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTAC  320
      ||  ||||||||||| ||||||||| || ||||||||||||||||| |||
seq2  TATTGTTGTTCCACCGATAGGGTTGCAGTTCCCTTTAGCTCCTTGGATAC  348

seq1  TTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACT  370
      |||||||||||||||||||||| ||| | ||| ||||||| || ||||||
seq2  TTTCTCTAGCTCCTCCATTGGGGGCCGTGTGACCCATCCAATAACTGACT  398

seq1  GTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTC  413
      |||| |||||||||||||||||||| |||||||||||||||||
seq2  GTGATCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTC  441