BAC Information

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BAC

Clone NameB6Ng01-025E15
Chromosome6 (Build37)Y (Build37)
Map Location 18,835,434 - 18,835,9521,967,407 - 1,967,715
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025E15.bB6Ng01-025E15.g
ACCDH856683DH856684
length560914
definitionDH856683|Mus musculus domesticus DNA, BAC clone: B6Ng01-025E15, 5' end.DH856684|Mus musculus domesticus DNA, BAC clone: B6Ng01-025E15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,434 - 18,835,952)(1,967,407 - 1,967,715)
sequence
agttgggggattagggatctcgcggaattctttgttcatgctctgagccc
catcctttaatggggttatttgattttctggagtccaccttcttgagttc
tttatatatattggatattaatcccctatctgatttgggataggtaaaga
tcctttcccaaactgttggtggcctttttgtcttattgacggtgtctttt
gctttgcagaagctttgcaattttatgaggtcccatttacagattcttga
tcttacagcacaagccattgctgttccattcaggaatttttcccctgtac
ccatatcttcgaggtttttccctactttgtcctctataagtttcagtgct
ctggttttatgtggagttccttaatccacttagatttgaccttagtacaa
ggagatagaaatggatcaattcgcattcttctacatgataaccgccagtt
gtgccagcaccatttgttgaaaatgctgtcttttttccactggatggttt
tagctcccttgtcaaagatcaagtgaccacaggtgtgtgggttcatctct
gggtcttcaa
gaattctttgtttagctctgagccccatttttttaatccagttttttttg
agcatttacatagctttttattgtagaaagttcttactatattaggaccc
caataataaattcaataaacaaatatgaagtgttacattcatttgtggat
taaaaaaaaaaaaaaacaacaaccaaccaaccaaacaaacagacaaacaa
aacagagaacagtacatagatacaggctttgaactcaaactctcatgctt
actatttgataaactcggtcatatcatttaactcttctcttttttaattc
tttttttattcagtattttcctcaattacatttccaaatctaccccaaaa
gtcccccataccctcaagccctactcccctatccacccactcccactttt
tggccctggcgttcccctgtactggggcatataaagtttgcctgaccaat
gggcctctctttccagtgatggccaactaggccatcttttgattcatatg
cagctagagacaagagctccggggtactggttagttcatattattgttcc
acctatagggttgcaggtccctttaggtcattgggtactttctctagctt
ctccattgggggccctgtgatgcatcctatagctgactgtgagcatccat
ttatgtgtttgctaggccccggcatagtctcacaagaaacagctatatca
ggatcctttcagcaaacccttgctaatgaatgcaatggtgtcatcatttg
gaggctgattatgggaatgtatccctggatatggcagtttctagatggcc
catccttttgtctcagttgaaactttttctctgtaactccttccatgggt
attttgttcccaatttaaaggaagggcaaagtgtccacactttggtcttt
gtcttcttcagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835434_18835952
seq2: B6Ng01-025E15.b_42_560 (reverse)

seq1  TTGAAGACCCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGAC  50
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  TTGAAGACCCAGAGATGAACCCACACACCTGTGGTCACTTGATCTTTGAC  50

seq1  AAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTG  100
      |||||||||||||||||||||||||| |||||||||||||||||||| ||
seq2  AAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATG  100

seq1  GTGCTGGCACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCAT  150
      ||||||||||||||||  |||||| |||||||||||| |||| |||||||
seq2  GTGCTGGCACAACTGGCGGTTATCATGTAGAAGAATGCGAATTGATCCAT  150

seq1  ACTTATCTCCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCAC  200
         ||||||| |||||||||||||||||||||||||| |||||||| |||
seq2  TTCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATTAAGGAACTCCAC  200

seq1  ATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCT  250
      |||||||||||| ||||||||||||||||||| ||||| ||||||| |||
seq2  ATAAAACCAGAG-CACTGAAACTTATAGAGGACAAAGTAGGGAAAAACCT  249

seq1  TGAAGATATGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-T  299
       ||||||||||| | ||||||||| ||||||||  ||||||||||||| |
seq2  CGAAGATATGGGTACAGGGGAAAAATTCCTGAATGGAACAGCAATGGCTT  299

seq1  GTGCTGTGAGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGT  349
      ||||||| || |  ||||||   ||||||||||| || ||| | ||||| 
seq2  GTGCTGTAAGATCAAGAATCTGTAAATGGGACCTCATAAAATTGCAAAGC  349

seq1  TTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGA  399
      |||||||| ||||||||||||||||||||||||||||| |||||||||| 
seq2  TTCTGCAAAGCAAAAGACACCGTCAATAAGACAAAAAGGCCACCAACAGT  399

seq1  TTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCA  449
      |||||||||||||||||||||||| ||||||||||||||| |||||||||
seq2  TTGGGAAAGGATCTTTACCTATCCCAAATCAGATAGGGGATTAATATCCA  449

seq1  ACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCC  499
      | |||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCC  499

seq1  ATTAATAAATGGGGCTCAGA  519
      |||||   ||||||||||||
seq2  ATTAAAGGATGGGGCTCAGA  519

seq1: chrY_1967407_1967715
seq2: B6Ng01-025E15.g_351_665

seq1  TTCTCTTT-----TCCATTTTTTA--AGGTATTTAGCTCATTTACATTTC  43
      ||||||||     | | |||||||    ||||||  |||| |||||||||
seq2  TTCTCTTTTTTAATTCTTTTTTTATTCAGTATTTTCCTCAATTACATTTC  50

seq1  CAATGCTATACCAAAAGTCCCCCATAGCCACCCACCCCCACTCCCCTACC  93
      |||  |||  |||||||||||||||| ||  | | ||| ||||||||| |
seq2  CAAATCTACCCCAAAAGTCCCCCATA-CCCTCAAGCCCTACTCCCCTATC  99

seq1  CACCCACTGCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATA  143
      |||||||| || ||||||||||||||||||||||||||||||||||||||
seq2  CACCCACTCCCACTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATA  149

seq1  AAGTTTGCATGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCC  193
      |||||||| || ||||||||||||||||||||||||||||| ||||||||
seq2  AAGTTTGCCTGACCAATGGGCCTCTCTTTCCAGTGATGGCCAACTAGGCC  199

seq1  ATCTTTTGATACCTATGCAGCAAGAGTCAAGAGCTCAGGGGTAATGGTTA  243
      |||||||||| | |||||||| |||| ||||||||| |||||| ||||||
seq2  ATCTTTTGATTCATATGCAGCTAGAGACAAGAGCTCCGGGGTACTGGTTA  249

seq1  GTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTG  293
      ||||||| | ||||||||||||||||||||||| ||||||||| || |||
seq2  GTTCATATTATTGTTCCACCTATAGGGTTGCAGGTCCCTTTAGGTCATTG  299

seq1  GGTACTTTCTCTAGCT  309
      ||||||||||||||||
seq2  GGTACTTTCTCTAGCT  315