BAC Information

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BAC

Clone NameB6Ng01-025F15
ChromosomeY (Build37)
Map Location 673,090 - 674,030
singlet/doubletsinglet
Overlap geneUsp9y
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246
Downstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025F15.bB6Ng01-025F15.g
ACCDH856727DH856728
length1,274939
definitionDH856727|Mus musculus domesticus DNA, BAC clone: B6Ng01-025F15, 5' end.DH856728|Mus musculus domesticus DNA, BAC clone: B6Ng01-025F15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattatgttgctacatctcacataattcaaggcactctttactca
gccagggattacaagccagggatgccataaccttttcttttatttaactt
tattattttgtgcttgtttctatgtaagtatatgcatatgcttgcatgtg
cttcagtgcaagtgtggaggtcagaaattattctatttcttcatacaggg
tcccaagtattaaacacagatcacagttcttaacagcaacacctttacct
accctcttcatagattcttggagttgttttgaatggaattactattatac
atagctctacccaaaatattacttgatttgacatttgacttaaagatcct
tttctacttctgagacttgggactctctttatagacctgagtgtcttaaa
acttaataatgtaaaccatactagcctagaatgcaaaaggtctgcctctg
cctcctaaatgttgaaataaaggctcagggctttctaattaattatttta
tttatttacatttcaaatgttgtccccttttatgggccacccttcatgac
ccccccaccttatatcctttcccctaaaagggtgcacccccatccactcc
tgcctcactcctcttaacattcaccttctctgaagcatcaagccttcacc
aaaccaaaggcctcccctcacattgatcagataaggccatcctctgcaac
atatgcagctggagccatgggtccctccatgtttactctttggttggtgg
tttagtccctgtgagctctgaggggtccagttaactgttactgttgttct
tcctatggggttgcaatcctcttcagctctttcagtccttcctcttaact
cttccatggggctctccgtgctcattccaatagctgtgaacatctacatc
tgtctcagtcagctgctgatagagactcagatgacagccatataaggcta
ctgactacaagcacaacgtggcatcagtagtagtgtgggtatagtatctg
cagatggaatggatgcacgggggacaatctctggatggcttttctttcag
tttctgcttcactttttgtcctactttcttagaaggaccattcttggtca
aattttgagaatgggcaagagcttatctcctttaggtggggctcatgtct
atcactgagattaaaatttccaaaagaattggagagtttggcttggttca
ggtttgaactttatgtacttgttattagggtgtaccaggctccatggatc
tgtatgtagtactagacctgatga
gaattccttgatttttttagatgaaaagtaagctaaaaatcattaacatt
aagttcactttaaataaaaattaaatacatccaagttaaattcttttctt
tgacttacaaagcaaaatcgaaagaataaaaagaaaaaaataagcggtat
ttgaagacagaaaatctcattcgaacacaatctcaagaagaattcagatg
tagcaaatagcaatcatataaggctgctaactgattttataatctctgag
gtcaaggcaagtttggtctacagagtgagtttccggaaagccaaggctac
acaaagaaagaatccctgacatgaaaaacaaacaaaacacaaaattattt
atatgtaagtatgaatgtatatatatgaaacaaacccaacaaaaagaaaa
tttcgagcacaactttcattagcatccatcttgtatgattgtagcaaagg
tagatagtaaaaagaggactgtatggaaagagaagggagtggcaagaaga
ggaagaggaaaggagaatagtacatttaattgtaagtgtgggaaaatgaa
ttatagtccttcctattataaacctaatagtgcacataagatttcttgtc
ttttttcatatttttactggttattttatttatttacatttcaagtgtta
tcccccttcccagtttcccctcctcaagcgcccatgccctccccctccac
acactgcctctatgagagtgctcccccacctgctcacacactagagcctc
agtactttagtgttccccatcactgggtcatcgagcctccataggaccaa
gggcctctcctcccatttctgaccgactaggctgtgctctgctacatatg
cagttggagccatgggtccctccatgagtatgctttggttggggttaatc
cctgggagctgtgggagtctgattgaatgatattgttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_673090_674030
seq2: B6Ng01-025F15.g_67_1005

seq1  GAATTCCTTGATTTTTTTAGATGAAAAGTAAGCTAAAAATCATTAACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGATTTTTTTAGATGAAAAGTAAGCTAAAAATCATTAACATT  50

seq1  AAGTTCACTTTAAATAAAAATTAAATACATCCAAGTTAAATTCTTTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCACTTTAAATAAAAATTAAATACATCCAAGTTAAATTCTTTTCTT  100

seq1  TGACTTACAAAGCAAAATCGAAAGAATAAAAAGAAAAAAATAAGCGGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTACAAAGCAAAATCGAAAGAATAAAAAGAAAAAAATAAGCGGTAT  150

seq1  TTGAAGACAGAAAATCTCATTCGAACACAATCTCAAGAAGAATTCAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGACAGAAAATCTCATTCGAACACAATCTCAAGAAGAATTCAGATG  200

seq1  TAGCAAATAGCAATCATATAAGGCTGCTAACTGATTTTATAATCTCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAATAGCAATCATATAAGGCTGCTAACTGATTTTATAATCTCTGAG  250

seq1  GTCAAGGCAAGTTTGGTCTACAGAGTGAGTTTCCGGAAAGCCAAGGCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGCAAGTTTGGTCTACAGAGTGAGTTTCCGGAAAGCCAAGGCTAC  300

seq1  ACAAAGAAAGAATCCCTGACATGAAAAACAAACAAAACACAAAATTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAAAGAATCCCTGACATGAAAAACAAACAAAACACAAAATTATTT  350

seq1  ATATGTAAGTATGAATGTATATATATGAAACAAACCCAACAAAAAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAAGTATGAATGTATATATATGAAACAAACCCAACAAAAAGAAAA  400

seq1  TTTCGAGCACAACTTTCATTAGCATCCATCTTGTATGATTGTAGCAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGAGCACAACTTTCATTAGCATCCATCTTGTATGATTGTAGCAAAGG  450

seq1  TAGATAGTAAAAAGAGGACTGTATGGAAAGAGAAGGGAGTGGCAAGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGTAAAAAGAGGACTGTATGGAAAGAGAAGGGAGTGGCAAGAAGA  500

seq1  GGAAGAGGAAAGGAGAATAGTACATTTAATTGTAAGTGTGGGAAAATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGAAAGGAGAATAGTACATTTAATTGTAAGTGTGGGAAAATGAA  550

seq1  TTATAGTCCTTCCTATTATAAACCTAATAGTGCACATAAGATTTCTTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTCCTTCCTATTATAAACCTAATAGTGCACATAAGATTTCTTGTC  600

seq1  TTTTTTCATATTTTTACTGGTTATTTTATTTATTTACATTTCAAGTGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCATATTTTTACTGGTTATTTTATTTATTTACATTTCAAGTGTTA  650

seq1  TCCCCCTTCCCAGTTTCCCCTCCTCAAGCGCCCATGCCCTCCCCCTCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTTCCCAGTTTCCCCTCCTCAAGCGCCCATGCCCTCCCCCTCCAC  700

seq1  ACACTGCCTCTATGAGAGTGCTCCCCCACCTGCTCACACACTAGAGCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCCTCTATGAGAGTGCTCCCCCACCTGCTCACACACTAGAGCCTC  750

seq1  AGTACTTTAGTGTTCCCCATCACTGGGTCATCGAGCCTCCATAGGACCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTTAGTGTTCCCCATCACTGGGTCATCGAGCCTCCATAGGACCAA  800

seq1  GGGCCTCTCCTCCCATTTCTGACCGACTAGGCTGTGCTCTGCTACATATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCTCCTCCCATTTCTGACCGACTAGGCTGTGCTCTGCTACATATG  850

seq1  CAGTTGGAGCCATGGGTCCCTCCATGAGTATGCTTTGGTTGGTGGTTTAG  900
      |||||||||||||||||||||||||||||||||||||||||  || ||| 
seq2  CAGTTGGAGCCATGGGTCCCTCCATGAGTATGCTTTGGTTG--GGGTTAA  898

seq1  TCCCTGGGAGCTGTGGGAGTCTGATTGAATGATATTGTTCT  941
      |||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGGAGCTGTGGGAGTCTGATTGAATGATATTGTTCT  939