BAC Information

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BAC

Clone NameB6Ng01-025J05
ChromosomeY (Build37)4 (Build37)
Map Location 1,870,346 - 1,870,41515,540,360 - 15,541,329
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025J05.bB6Ng01-025J05.g
ACCDH856882DH856883
length470969
definitionDH856882|Mus musculus domesticus DNA, BAC clone: B6Ng01-025J05, 5' end.DH856883|Mus musculus domesticus DNA, BAC clone: B6Ng01-025J05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,415)(15,540,360 - 15,541,329)
sequence
gaattcccatgctatgtactcactaataagtggatattagcccagaaact
tagaatacccaagatacaatttgcaaaacacatgaaactcaagaagaacg
aataccaaagtgtggacactttgccccttcttagaattgggaacaaaata
cccatggaaggagttacagagacaaagttaggagctgagatgaaatgatg
gaccatctagagagttccgcacccagggatccatcccataatcattctcc
aaacgcagataccattgcatacaccagcaagattcttctgaaaggaccct
gatatagctgtctcttgtgaggctctgctagtgcctggcaaacacagaag
tggatgctcagtcagctattggatggaacacagggtccccaaaggaagag
ctagagaaagtacccaaggagctaaaggggtctgcaaccctattggtgga
acaacagtatgaactaacca
gaattcatcatatgtttaaaattccaaaagcattaataaaaatacaagga
atgtttgttcaatttaatctaaatcacaaagaccacagtacccatgttac
atggttgctaagtcaaaaatatgaataatttatttgcacacgtaatcaga
ttaaaatatggggacttgaatattgaaaaatatcacttgcctgaagaaat
ggagtcctggaagaaaggatgagttatatgttcaataaaaccttctcagt
tctcaggggatctaataaaaatggatggggatggaaggttattgtgaact
aattttgttgaatccagatatattctttctataaacaggcttttaaaaaa
ttattttaattcataaatccatgttaactggataagttcttaggctgtat
ttgatttagactggattactgaaacaatattgggctctaatctatgtatc
agtatgaattgttataagtattctcatgttgttcagataagtactttcaa
attttatttaactacagaaaactttttcctctaacttcattaatgattga
attattaatgaagttatttattaaattatctaataaattatttaaattta
aattttattattcattttcacattttttttgcttttatcaaatctacaaa
atatctcaagtatcaaagtcttatttaaattaatgcatctaaagatatga
catcattctagaatattgttttaatatgtataagtcattgtggtagtatt
catgtaaataaatattaaacaactaagcatggggaaaattacaaaaactt
catgctcttcttatatgattaaggatgaagatataaatatgttgaaaata
aatatatcaaatgatggttttggtttcacattcaaaatggcaactatccc
ttgacctattcttgttctcatacttggtgtttggttacgccttctttgta
gcttgttatgtatatgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870415
seq2: B6Ng01-025J05.b_447_516

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCTGCAACCCTATTGGTGGA  50

seq1  ACAACATTATGAACTAACCA  70
      |||||| |||||||||||||
seq2  ACAACAGTATGAACTAACCA  70

seq1: chr4_15540360_15541329
seq2: B6Ng01-025J05.g_66_1034 (reverse)

seq1  ACACATATACATACACAAGCTACAAAGAAGGCGTAACCAAACACCAAGTA  50
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACACATATACATA-ACAAGCTACAAAGAAGGCGTAACCAAACACCAAGTA  49

seq1  TGAGAACAAGAATAGGTCAAGGGATAGTTGCCATTTTGAATGTGAAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACAAGAATAGGTCAAGGGATAGTTGCCATTTTGAATGTGAAACCA  99

seq1  AAACCATCATTTGATATATTTATTTTCAACATATTTATATCTTCATCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATCATTTGATATATTTATTTTCAACATATTTATATCTTCATCCTT  149

seq1  AATCATATAAGAAGAGCATGAAGTTTTTGTAATTTTCCCCATGCTTAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATAAGAAGAGCATGAAGTTTTTGTAATTTTCCCCATGCTTAGTT  199

seq1  GTTTAATATTTATTTACATGAATACTACCACAATGACTTATACATATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATATTTATTTACATGAATACTACCACAATGACTTATACATATTAA  249

seq1  AACAATATTCTAGAATGATGTCATATCTTTAGATGCATTAATTTAAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATTCTAGAATGATGTCATATCTTTAGATGCATTAATTTAAATAA  299

seq1  GACTTTGATACTTGAGATATTTTGTAGATTTGATAAAAGCAAAAAAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGATACTTGAGATATTTTGTAGATTTGATAAAAGCAAAAAAAATG  349

seq1  TGAAAATGAATAATAAAATTTAAATTTAAATAATTTATTAGATAATTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGAATAATAAAATTTAAATTTAAATAATTTATTAGATAATTTAA  399

seq1  TAAATAACTTCATTAATAATTCAATCATTAATGAAGTTAGAGGAAAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAACTTCATTAATAATTCAATCATTAATGAAGTTAGAGGAAAAAGT  449

seq1  TTTCTGTAGTTAAATAAAATTTGAAAGTACTTATCTGAACAACATGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTAGTTAAATAAAATTTGAAAGTACTTATCTGAACAACATGAGAA  499

seq1  TACTTATAACAATTCATACTGATACATAGATTAGAGCCCAATATTGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATAACAATTCATACTGATACATAGATTAGAGCCCAATATTGTTTC  549

seq1  AGTAATCCAGTCTAAATCAAATACAGCCTAAGAACTTATCCAGTTAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCCAGTCTAAATCAAATACAGCCTAAGAACTTATCCAGTTAACAT  599

seq1  GGATTTATGAATTAAAATAATTTTTTAAAAGCCTGTTTATAGAAAGAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTATGAATTAAAATAATTTTTTAAAAGCCTGTTTATAGAAAGAATA  649

seq1  TATCTGGATTCAACAAAATTAGTTCACAATAACCTTCCATCCCCATCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGATTCAACAAAATTAGTTCACAATAACCTTCCATCCCCATCCAT  699

seq1  TTTTATTAGATCCCCTGAGAACTGAGAAGGTTTTATTGAACATATAACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTAGATCCCCTGAGAACTGAGAAGGTTTTATTGAACATATAACTC  749

seq1  ATCCTTTCTTCCAGGACTCCATTTCTTCAGGCAAGTGATATTTTTCAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCTTCCAGGACTCCATTTCTTCAGGCAAGTGATATTTTTCAATA  799

seq1  TTCAAGTCCCCATATTTTAATCTGATTACGTGTGCAAATAAATTATTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTCCCCATATTTTAATCTGATTACGTGTGCAAATAAATTATTCAT  849

seq1  ATTTTTGACTTAGCAACCATGTAACATGGGTACTGTGGTCTTTGTGATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGACTTAGCAACCATGTAACATGGGTACTGTGGTCTTTGTGATTT  899

seq1  AGATTAAATTGAACAAACATTCCTTGTATTTTTATTAATGCTTTTGGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAATTGAACAAACATTCCTTGTATTTTTATTAATGCTTTTGGAAT  949

seq1  TTTAAACATATGATGAATTC  970
      ||||||||||||||||||||
seq2  TTTAAACATATGATGAATTC  969