BAC Information

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BAC

Clone NameB6Ng01-025J13
Chromosome7 (Build37)Y (Build37)
Map Location 13,611,897 - 13,612,5901,494,285 - 1,494,314
singlet/doubletsingletsinglet
Overlap geneTrim28
Upstream geneLOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553
Downstream geneChmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627, EG434121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025J13.bB6Ng01-025J13.g
ACCDH856898DH856899
length699578
definitionDH856898|Mus musculus domesticus DNA, BAC clone: B6Ng01-025J13, 5' end.DH856899|Mus musculus domesticus DNA, BAC clone: B6Ng01-025J13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,611,897 - 13,612,590)(1,494,285 - 1,494,314)
sequence
gaattcaaaaacagacttgtttctacagcccagatgtcctcaaaagccct
gaggcacaggacttgggaggcaaaagcagaccggagtttgagaccaacct
gatttgtatagtgagttacaggccaaatgggctagcagtaactatatgct
gagctatctacttccacaaaaaaggtctggtgggtcacaacttctcacaa
ctttaaacccagcaccacttgagaagcagaggtaggtaaaatctgtatga
agaccatcctggttccttgtttacatagtgagttaaaggacaagattata
tacagaccttgcctcaatcaatcaataaataaataaacaaacaaacaaac
aaacaaaaaccaaaaacctgagcatggcaagccttaataaactcagcact
caatagcaaaggtaggtatctgttagttgaagccagccaattctacaaag
atctaagacagtcagggctgatacaaaaaaacccagtgttgaaaagcaaa
atacaaacaaacaaaatgagcagggaacaggcacattccaaatgcctatt
taaatcccagcactttggagttatgggaggagcaataaagtccaaggcaa
agccaggtgccacatgaaggcagaatctgagttaaaaggccagcctgctc
tacagagtgagttccaggacagctaagagttgcccttgagggtttggga
gaattcctaatctttccaagacttttaacatgaagggatgttgaattttg
tcaaatgctttttcagcatctaatgagatcatgtgggtttgttttgattt
gttttgagtttgtttatgtaatggattacattgatggatttctgtatact
gacccatccctgcatccatggtacgaagcaaacttgatcatggagaacga
tcgttttggaagtattcttggatttggttttcaagaattttattgaatat
ttttgtgttgatattcataaagaaaattggtctgaggttctctttcattt
ttgggtctttgtgtggttttgttatcaatgtaactgtgacttcatagaat
gaattgggtagtgttccttctgtttctattttgttgaatagtttgaagag
tattgatattatgtcttctttgaaggtctcatagaattctgcactaaacc
catctggtccagggctcttttttttttttttttttttttttttttggttg
ggagacttttaataactgcttctatttctttaggggttatgggaatgttt
agatgggtaaatctgatcctgacctaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_13611897_13612590
seq2: B6Ng01-025J13.b_50_744 (reverse)

seq1  TCCCAACCCCTCCAGGGCAACTCTTAGCTGTCCTGGAACTCACTCTGTAG  50
      |||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  TCCCAAACCCTCAAGGGCAACTCTTAGCTGTCCTGGAACTCACTCTGTAG  50

seq1  AGCAGGCTGGCCTTTTAACTCAGATTCTGCCTTCCTGTGGCACCTGGCTT  100
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGCAGGCTGGCCTTTTAACTCAGATTCTGCCTTCATGTGGCACCTGGCTT  100

seq1  TGCCTTGGACTTTATTGCTCCTCCCATAACTCCAAAGTGCTGGGATTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGGACTTTATTGCTCCTCCCATAACTCCAAAGTGCTGGGATTTAA  150

seq1  ATAGGCATTTGGAATGTGCCTGTTCCCTGCTCATTTTGTTTGTTTGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCATTTGGAATGTGCCTGTTCCCTGCTCATTTTGTTTGTTTGTATT  200

seq1  TTGCTTTTCAACACTGGGTTTTTTTGTATCAGCCCTGACTGTCTTAGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTCAACACTGGGTTTTTTTGTATCAGCCCTGACTGTCTTAGATC  250

seq1  TTTGTAGAATTGGCTGGCTTCAACTAACAGATACCTACCTTTGCTATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGAATTGGCTGGCTTCAACTAACAGATACCTACCTTTGCTATTGA  300

seq1  GTGCTGAGTTTATTAAGGCTTGCCATGCTCAGGTTTTTGGTTTTTGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAGTTTATTAAGGCTTGCCATGCTCAGGTTTTTGGTTTTTGTTTG  350

seq1  TTTGTTTGTTTGTTTATTTATTTATTGATTGATTGAGGCAAGGTCTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTATTTATTTATTGATTGATTGAGGCAAGGTCTGTAT  400

seq1  ATAATCTTGTCCTTTAACTCACTATGTAAACAAGGAACCAGGATGGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTTGTCCTTTAACTCACTATGTAAACAAGGAACCAGGATGGTCTT  450

seq1  CATACAGATTTTACCTACCTCTGCTTCTCAAGTGGTGCTGGGTTTAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGATTTTACCTACCTCTGCTTCTCAAGTGGTGCTGGGTTTAAAGT  500

seq1  TGTGAGAAGTTGTGACCCACCAGACCTTTTTTGTGGAAGTAGATAGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAAGTTGTGACCCACCAGACCTTTTTTGTGGAAGTAGATAGCTCA  550

seq1  GCATATAGTTACTGCTAGCCCATTTGGCCTGTAACTCACTATACAAATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATAGTTACTGCTAGCCCATTTGGCCTGTAACTCACTATACAAATCA  600

seq1  GGTTGGTCTCAAACTCCGGTCTGCTTTTGCCTCCCAAGTCCTGTGCCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTCTCAAACTCCGGTCTGCTTTTGCCTCCCAAGTCCTGTGCCTCA  650

seq1  GGGCTTTTGAGGACATCT-CACTGTAGAAACAAGTCTGTTTTTGA  694
      ||||||||||||||||||   ||||||||||||||||||||||||
seq2  GGGCTTTTGAGGACATCTGGGCTGTAGAAACAAGTCTGTTTTTGA  695

seq1: chrY_1494285_1494314
seq2: B6Ng01-025J13.g_537_566

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTGGTT  30
      ||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTTTTTGGTT  30