BAC Information

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BAC

Clone NameB6Ng01-025M11
Chromosome1 (Build37)Y (Build37)
Map Location 16,727,136 - 16,727,9841,544,547 - 1,544,589
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePpia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2, Ube2w, Tceb1, LOC665480, Tmem70, Ly96
Downstream geneLOC100040056, LOC665496, EG545306, Jph1, Gdap1, LOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15, Crispld1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025M11.bB6Ng01-025M11.g
ACCDH857013DH857014
length850975
definitionDH857013|Mus musculus domesticus DNA, BAC clone: B6Ng01-025M11, 5' end.DH857014|Mus musculus domesticus DNA, BAC clone: B6Ng01-025M11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(16,727,136 - 16,727,984)(1,544,547 - 1,544,589)
sequence
gaattcaagcaggtcaggaagcaggagctgatgcagaggccatggaggga
tgttccttactggcttgcttccaccggcttgctcagctttctttcttttc
tttttctttttttttttttaaatttttttcagcttgctttcttatagaac
tcaagactaccagcccagggatggtcccacccacaaggggctctcccacc
ttgatcactaattgagaaaatgccttacagctggatctcatggaggcatt
tcctcaactgaagctcctttctctgtgataactccaggtgtgtcaagttg
acacacaaaaccagccagtacatcatctatgacctaattcttcactaaaa
cttctaagattagcattgtttatggagaaggccatcgagcaatcatctag
tagaaggcctctttgtgctcccagccacagctgccaccaaactgaaacct
gcagccgccaagccaaggactctcccagaggggactgtaaggacctgtcc
ctcagtcagtggtacttgagacactgagatgcagatcgatgcaaaaagga
agaagtttattttccagagagtcagggtcaaccttcaatcagtccctcaa
ggcaagttactaaaacagcgacccgaatggccattacaagcagtttttat
actttttgggggcacaggttacattagcaaggttacagttcaaacttatt
ggctaagcatattgaccttttttaatttacttatttatcatatgtaagca
cacactgaagagggcgtcagatctcattatggatggttgtgagtcaccat
gtggttggtgggatttgaactcaggaccttcagaagagcagttagtgctc

gaattcaaggtcatctgaggttaaaggtgttgtggcacacacctttaatc
tggctacaccttctgctggagaccatataaggatattggaagaagggaga
ctcactcttgctcttttgcctgcttgctgtgtgggactgagcaactgcta
gatccttggacttccattcacagctactactgaaccattgttgggaattg
gactacagactataagtcatcaataaattcctttactatgtagagactat
ctataagtcctgcgactctagagaaccctgactaatacacgaatattcac
gtggaaactgaacaacactcttctcaatgatattttggtcaaggaagaaa
tgaagaaagaaattaaagactttttaagagtttaatgaaaatgaagccac
aacatacccaaatttatgggacacaaggaaggcagtctggaggaaaactc
atagccctgagtgcctccaaaaagaaattagagagagcatacactagcag
cctgaaggcacacctagaagctctagaataaagagaagcaaattcacaca
agaggagtagactgcaggaaataatctaacttagagctgaaatcaaccaa
gtggaaacaaaaagaactattcaaagaattaaccaaaccagaaactggtt
ctttgagaaaatccaacaagatagattaacccttagccagactaatagag
ggcacagggacagtatcctaattaacacaatcagaaatgaaaaaggagac
ataccaacagaacctgaggaaatccaaaacaacgtcagatcctactacaa
aagggtatactcaacaaaactggaaaacatgaatgaaatggacacttcct
agtcagataccaggtaccaaagttaaatcagaatcagattaacgctctaa
acagccccatttcccaagaaatagaagcagtcatttaatagtctctaacc
aaaaaagcacaggaccagatgggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_16727136_16727984
seq2: B6Ng01-025M11.b_39_888

seq1  GAATTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGA  50

seq1  TGTTCCTTACTGGCTTGCTTCCACCGGCTTGCTCAGCTTTCTTTCTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTTACTGGCTTGCTTCCACCGGCTTGCTCAGCTTTCTTTCTTTTC  100

seq1  TTTTTCTTTTTTTTTTTTTAAATTTTTTTCAGCTTGCTTTCTTATAGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTTTTTTTTTTAAATTTTTTTCAGCTTGCTTTCTTATAGAAC  150

seq1  TCAAGACTACCAGCCCAGGGATGGTCCCACCCACAAGGGGCTCTCCCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACTACCAGCCCAGGGATGGTCCCACCCACAAGGGGCTCTCCCACC  200

seq1  TTGATCACTAATTGAGAAAATGCCTTACAGCTGGATCTCATGGAGGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCACTAATTGAGAAAATGCCTTACAGCTGGATCTCATGGAGGCATT  250

seq1  TCCTCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGGTGTGTCAAGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGGTGTGTCAAGTTG  300

seq1  ACACACAAAACCAGCCAGTACATCATCTATGACCTAATTCTTCACTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAAACCAGCCAGTACATCATCTATGACCTAATTCTTCACTAAAA  350

seq1  CTTCTAAGATTAGCATTGTTTATGGAGAAGGCCATCGAGCAATCATCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAGATTAGCATTGTTTATGGAGAAGGCCATCGAGCAATCATCTAG  400

seq1  TAGAAGGCCTCTTTGTGCTCCCAGCCACAGCTGCCACCAAACTGAAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGCCTCTTTGTGCTCCCAGCCACAGCTGCCACCAAACTGAAACCT  450

seq1  GCAGCCGCCAAGCCAAGGACTCTCCCAGAGGGGACTGTAAGGACCTGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCGCCAAGCCAAGGACTCTCCCAGAGGGGACTGTAAGGACCTGTCC  500

seq1  CTCAGTCAGTGGTACTTGAGACACTGAGATGCAGATCGATGCAAAAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCAGTGGTACTTGAGACACTGAGATGCAGATCGATGCAAAAAGGA  550

seq1  AGAAGTTTATTTTCCAGAGAGTCAGGGTCAACCTTCAATCAGTCCCTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTTATTTTCCAGAGAGTCAGGGTCAACCTTCAATCAGTCCCTCAA  600

seq1  GGCAAGTTACTAAAACAGCGACCCGAATGGCCATTACAAGCAGTTTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTTACTAAAACAGCGACCCGAATGGCCATTACAAGCAGTTTTTAT  650

seq1  ACTTTTTGGGGGCACAGGTTACATTAGCAAGGTTACAGTTCAAACTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTGGGGGCACAGGTTACATTAGCAAGGTTACAGTTCAAACTTATT  700

seq1  GGCTAAGCATATTGACC-TTTTTAATTTACTTATTTATCATATGTAAGCA  749
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGCTAAGCATATTGACCTTTTTTAATTTACTTATTTATCATATGTAAGCA  750

seq1  CACACTGAAGAGGGCGTCAGATCTCATTATGGATGGTTGTGAGTCACCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGAAGAGGGCGTCAGATCTCATTATGGATGGTTGTGAGTCACCAT  800

seq1  GTGGTTGGTGGGATTTGAACTCAGGACCTTCAGAAGAGCAGTTAGTGCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGGTGGGATTTGAACTCAGGACCTTCAGAAGAGCAGTTAGTGCTC  850

seq1: chrY_1544547_1544589
seq2: B6Ng01-025M11.g_78_120 (reverse)

seq1  CCAGATTAAAGGTGTGTTCCACCACACCTTTAATCCCAGATGA  43
      ||||||||||||||||| |||| |||||||||| | |||||||
seq2  CCAGATTAAAGGTGTGTGCCACAACACCTTTAACCTCAGATGA  43