MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-025M17
Chromosome	Y (Build37)
Map Location	1,870,346 - 1,870,570
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream gene	Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
Link	Open Mouse BAC browser

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Click to get alignment info.

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-025M17.b	B6Ng01-025M17.g
ACC	DH857025	DH857026
length	1,166	469
definition	DH857025\|Mus musculus domesticus DNA, BAC clone: B6Ng01-025M17, 5' end.	DH857026\|Mus musculus domesticus DNA, BAC clone: B6Ng01-025M17, 3' end.
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	gaattctttgtttagctctgagccccatttttaatggggttatttgattt tctggagtccaccttcttgagttctttatatatattggatattagtcccc tatctgatttaggataggtaaagatcctttcccaatctgttggtggagtt ctttgccttgccgaagctttgcaattttgtgaggtcccatttgtcaattc tcgaacttacagcacaagccattgctgttctattcaggaacttttcccct gtgcccatatcttcgaggctttttcccactttctcctctgtaagtttcag cgtctctggttttatgtggagttccttgatcctcttagttttgaccttat tacaatgagataggaatggatcaatttgaattcttctacatgttaaccgc cagtgtgccagtaccatttgttgaaaatgctgtcttttttccactggatg gttttagctcccttgtcaaagatcaagtgaccataggtgtgtgggttcat ttctgggtcttcaattctattccactggtctacttgtctgttgctatacc agtaccatgcagtttttatcacaattgctctgtagtacagctttaggtca ggcatggtgatttcaccagaggttcttttatccttgagaagagtttttgc tatcctaggtttttcgttattccagatgaatttgcagattgctctttcta attcgttgaagaattaagttggaattttgatggaggttgcattgaatctg tagattgcttttgtcaagatagccatttttactatattgatcctgccaat ccatgagcatgggagttctatccatcttctgagatcttctttaatttctt tcttcagagacttgaagttcttgtcatacagatctttcaattccttagtt agagtcacaccaaggtattttatattatttgtgactattgagaagtgtat atacctaatttctttcatagcctgttatctttgtgtaaagaaagccattg actggttgagtaaatttattccagccactcactgaactgtttatcagttt agaggtccctggtggaattttagggtcactatataaacctccattatctg ccaagtgattttgaccctcttcctaccaatggataccttaaaccctcttg tgtctactcaccacaa	cttttagagttacagagacaaagtttggagctgagatgaaaggatggacc atgtagagactgccatatccagagatccaccccataatcagcatccaaac gctgacaccattgcatacactagcaagattttattgaaaggacccagatg tagctgtctcttgtgagactatgccagggcctagcaaacacagaagtgga tgatcacagtcagctaatggatggatcacagggctcccaatggaggagct agagaaagtacccaaggagctaaagggatctgcaaccctataggtggaac aacattatgaactaaccagtaccccggagctcttggctctagctgcatat gtatcaaaagatggcctagtcggccatcactggagaggcccattggacac gcaaactttatatgccccagtacaggggaacgccagggccaaaaaggggg agtgggtgggtaggggagt
quality values	Open. Hide. 61 47 43 37 61 61 61 61 55 47 61 61 59 59 59 61 61 61 61 61 61 61 61 61 59 39 21 26 28 32 37 39 33 33 27 44 59 61 61 61 61 61 59 61 61 59 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 43 44 44 44 37 55 59 61 61 61 61 61 61 61 61 61 59 55 59 61 61 61 61 61 61 61 61 61 61 59 55 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 59 59 59 61 61 61 59 59 59 61 61 59 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 59 61 59 61 59 61 59 55 44 61 59 61 59 59 61 59 55 55 55 59 59 59 59 59 61 61 61 61 59 59 61 59 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 55 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 59 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 52 61 61 61 61 61 61 61 61 61 61 61 61 46 61 61 61 61 38 61 61 61 61 45 61 40 43 61 61 61 47 47 61 43 50 57 45 57 40 53 50 53 57 57 53 45 53 53 53 53 53 53 57 34 57 57 40 57 45 50 57 57 57 57 40 47 52 53 53 53 47 53 53 42 46 30 57 57 57 53 47 37 47 52 53 53 43 47 47 31 47 57 40 53 53 37 38 57 57 32 43 53 42 52 34 53 53 50 50 53 45 57 50 45 40 41 41 33 53 52 37 50 53 50 52 53 27 57 42 30 52 39 57 38 57 46 47 43 47 45 31 57 57 52 38 50 28 53 50 41 27 36 11 53 40 37 33 50 51 40 30 53 37 50 38 41 42 53 38 38 35 34 38 30 40 57 57 43 37 30 42 26 40 36 48 37 33 27 27 20 17 33 57 57 57 8 11 36 37 40 33 40 33 33 33 34 35 32 42 37 48 30 53 18 31 34 31 32 27 37 40 48 28 44 28 37 53 57 40 40 31 44 25 37 33 40 30 32 33 27 41 41 39 39 35 35 35 39 33 37 22 24 27 32 29 32 51 43 28 33 34 51 30 29 30 51 29 35 17 24 29 30 16 33 14 29 20 29 33 30 33 36 21 29 28 29 28 29 43 27 32 22 29 27 29 27 28 29 34 28 29 51 39 28 15 33 32 33 34 33 23 33 33 21 28 28 29 21 43 24 29 29 21 29 16 19 25 20 28 33 29 14 28 34 51 51 34 33 18 24 23 31 27 29 51 31 20 19 20 28 31 20 26 24 30 24 31 26 35 6 12 6 15 21 9 23 20 28 20 30 28 25 26 20 20 51 21 28 23 51 31 18 15 28 33 20 29 25 26 28 18 26 16 31 10 7 51 30 28 17 33 15 13 7 11 8 7 35 7 4 4 11 7 21 15 17 11 19 14 24 26 7 25 16 8 10 23 7 35 8 35 42 7 5 3 4 6 19 19 18 30 14 9 8 26 10 10 29 23 19 19 17 8 15 19 6 29 30 12 10 16 5 17 5 30 19 15 21 10 7 6 10 8 36 31 18 29 12 9 17 26 10 22 15 32 35 24 17 17 32 23 6 12 7 9 12 5 7 4 8 10 6 5 5 4 3 3 7 5 11 6 19 4 15 11 7 4 4 17 6 4 4 8 24 4 27 25 23 13 6 4 8 3 5 4 4 7 15 12 20 6 7 8 4 14 10 3 6 5 13 4 18 21 4 3 3 6 5 4 4 6 4 5 12 4 3 4 6 9 4 5 3 3 3 3 3 3 3 3 4 8 5	Open. Hide. 22 10 12 15 22 11 10 20 29 43 52 52 52 38 43 55 41 59 59 43 52 52 43 52 59 52 59 59 59 52 59 59 59 61 43 59 59 59 61 59 59 59 61 59 37 52 41 40 37 37 49 59 61 59 59 49 61 59 59 59 59 61 59 59 43 59 59 59 59 59 43 49 61 52 59 59 59 59 52 59 59 43 59 37 59 59 52 59 59 49 45 52 52 59 52 59 49 59 59 59 49 59 59 59 59 59 52 59 59 43 59 59 59 52 52 59 52 59 45 59 59 59 36 43 41 49 45 59 52 59 59 52 52 59 52 59 52 52 52 52 59 59 59 59 59 52 38 59 59 59 59 49 36 52 59 59 59 59 59 59 59 59 59 49 49 59 36 59 45 52 49 59 59 52 59 52 59 61 61 59 59 59 59 43 52 52 52 59 59 49 59 59 49 61 59 52 59 61 59 61 59 59 61 59 59 59 59 52 59 52 59 52 59 59 59 59 59 59 61 59 59 59 59 61 61 59 59 59 59 59 52 61 59 59 59 59 61 59 59 59 59 61 59 61 59 61 61 59 59 59 59 59 59 52 59 59 59 59 59 59 59 59 59 52 59 49 59 59 49 52 59 52 59 59 43 55 59 59 59 59 59 59 59 43 49 52 55 55 55 52 52 49 49 55 52 55 55 55 55 52 49 49 52 39 52 52 52 52 52 55 52 52 52 52 52 55 55 47 52 52 52 55 55 55 61 55 61 61 55 61 61 61 61 55 61 61 55 61 61 55 55 55 55 55 55 55 50 55 55 61 61 61 50 55 50 50 50 55 50 50 61 37 55 61 55 55 50 55 34 50 50 49 55 50 55 50 55 55 50 55 50 61 50 47 50 61 50 61 50 61 61 53 53 50 50 43 47 50 43 53 43 52 50 50 53 53 53 61 61 53 53 52 53 61 53 52 53 52 47 39 39 38 50 43 39 50 32 50 61 47 47 38 47 53 33 43 47 47 42 47 61 61 61 61 42 61 61 61 61 61 61 61 53 47 42 47 53 57 57 57 53 47 47 47 43 45 47 21 9

Alignment Information

BAC End 1	BAC End 2
	seq1: chrY_1870346_1870570 seq2: B6Ng01-025M17.g_323_543 seq1 CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA 50 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| seq2 CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA 50 seq1 ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT 100 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\| seq2 ACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGGCTCTAGCTGCAT 100 seq1 AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT 150 \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| seq2 ATGTATCAAAAGATGGCCTAGTCGGCCATCACTG----GAGAGGCCCATT 146 seq1 GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA 200 \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| seq2 GGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA 196 seq1 AGGGGCAGTGGGTGGGTAGGGGAGT 225 \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| seq2 AGGGGGAGTGGGTGGGTAGGGGAGT 221

BAC End 1

BAC End 2

seq1: chrY_1870346_1870570
seq2: B6Ng01-025M17.g_323_543

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||||| |||||| ||||||||| |||| |||||||
seq2  ACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGGCTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | ||||||||||||||||||||||||||||||||    ||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCGGCCATCACTG----GAGAGGCCCATT  146

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  196

seq1  AGGGGCAGTGGGTGGGTAGGGGAGT  225
      ||||| |||||||||||||||||||
seq2  AGGGGGAGTGGGTGGGTAGGGGAGT  221

BAC Information

Search Parameter

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BAC

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BAC End Information

Alignment Information