BAC Information

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BAC

Clone NameB6Ng01-026D21
Chromosome4 (Build37)Y (Build37)
Map Location 16,990,766 - 16,991,4541,870,346 - 1,870,425
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRipk2, LOC667150, LOC383994, LOC100040154, LOC667212
Downstream geneLOC100040173, Mmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026D21.bB6Ng01-026D21.g
ACCDH857344DH857345
length689500
definitionDH857344|Mus musculus domesticus DNA, BAC clone: B6Ng01-026D21, 5' end.DH857345|Mus musculus domesticus DNA, BAC clone: B6Ng01-026D21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(16,990,766 - 16,991,454)(1,870,346 - 1,870,425)
sequence
gaattctctcatccatttctctctcttgttgtggcatactttctctttct
aaaacttatattcaatttgggctgcctcagtacttttgaatatatggcgt
tctgttgatttctttttgttacccttctattatttcctctgttacacatt
ggaatacatattctatattatcttttgtagactcatagataattattttt
caccataaatagaagcatgcatatcaagaatatacttcttatattcttaa
gctgtgggtctcactacttttatatttgaccctctaaaaatcctcatata
taaccatgtcctttgggatcagcattgtccccatatgcagggtgatttta
cttaaactctattaagtattttctgttgagtatcatttagctatttgctt
ttgttcttttggagtgtattacagttttatttgattttttaatacagtta
taataatcttttttaatttttgtattctaattattcttactaaaggttgt
ttctacaggattagtaacatttggagatggcatattgtctacctttcaat
gtgttgtttgtatgttcacttatctactttttattgtttctgcaatggga
cttgagaatctggagctgattggctgacattctctctctctctctctctc
tctctctctctctctctctctctctctcacgaaagccct
gaattctttgtttagctctgtaccccatttttaatggggttatttgattc
tctagagtccaacttcttgaattctttgtatatattgggtattagttatt
tgtgactattgaaaagggtgttgtgaagtgtggacactatgcccctcctt
agaagtgggaacaaaacacccatggaaggagttacagagacaaagtttgg
atttgagatgaaaggatggaccatgtagagactgccatatccaaggatcc
accccataatcagcatccaaacgctgacaccattgcatacactagcaaga
ttttatcgaaaggacccagatgtagctgtctcttgtgagactatgccggg
gcttagcaaacacagaagtggatgctcacagtcagctaatggatggataa
cagggctcccaatggaggagctagagaaagaacccaaggagctaaaggga
tctgcaaccctataggtggaacaacattatgaactatccattaccccgga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_16990766_16991454
seq2: B6Ng01-026D21.b_43_731

seq1  GAATTCTCTCATCCATTTCTCTCTCTTGTTGTGGCATACTTTCTCTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCATCCATTTCTCTCTCTTGTTGTGGCATACTTTCTCTTTCT  50

seq1  AAAACTTATATTCAATTTGGGCTGCCTCAGTACTTTTGAATATATGGCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTATATTCAATTTGGGCTGCCTCAGTACTTTTGAATATATGGCGT  100

seq1  TCTGTTGATTTCTTTTTGTTACCCTTCTATTATTTCCTCTGTTACACATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGATTTCTTTTTGTTACCCTTCTATTATTTCCTCTGTTACACATT  150

seq1  GGAATACATATTCTATATTATCTTTTGTAGACTCATAGATAATTATTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATACATATTCTATATTATCTTTTGTAGACTCATAGATAATTATTTTT  200

seq1  CACCATAAATAGAAGCATGCATATCAAGAATATACTTCTTATATTCTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATAAATAGAAGCATGCATATCAAGAATATACTTCTTATATTCTTAA  250

seq1  GCTGTGGGTCTCACTACTTTTATATTTGACCCTCTAAAAATCCTCATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGGTCTCACTACTTTTATATTTGACCCTCTAAAAATCCTCATATA  300

seq1  TAACCATGTCCTTTGGGATCAGCATTGTCCCCATATGCAGGGTGATTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATGTCCTTTGGGATCAGCATTGTCCCCATATGCAGGGTGATTTTA  350

seq1  CTTAAACTCTATTAAGTATTTTCTGTTGAGTATCATTTAGCTATTTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACTCTATTAAGTATTTTCTGTTGAGTATCATTTAGCTATTTGCTT  400

seq1  TTGTTCTTTTGGAGTGTATTACAGTTTTATTTGATTTTTTAATACAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTTTGGAGTGTATTACAGTTTTATTTGATTTTTTAATACAGTTA  450

seq1  TAATAATCTTTTTTAATTTTTGTATTCTAATTATTCTTACTAAAGGTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATCTTTTTTAATTTTTGTATTCTAATTATTCTTACTAAAGGTTGT  500

seq1  TTCTACAGGATTAGTAACATTTGGAGATGGCATATTGTCTACCTTTCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAGGATTAGTAACATTTGGAGATGGCATATTGTCTACCTTTCAAT  550

seq1  GTGTTGTTTGTATGTTCACTTATCTACTTTTTATTGTTTCTGCAATGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTTTGTATGTTCACTTATCTACTTTTTATTGTTTCTGCAATGGGA  600

seq1  CTTGAGAATCTGGAGCTGATTGGCTGACATTCTCTCTCTCTCTCTCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAATCTGGAGCTGATTGGCTGACATTCTCTCTCTCTCTCTCTCTC  650

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCATTAAAGCCCT  689
      |||||||||||||||||||||||||||||  ||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCACGAAAGCCCT  689

seq1: chrY_1870346_1870425
seq2: B6Ng01-026D21.g_488_567

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGAACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGA  80
      |||||||||||||||| |||||||||| ||
seq2  ACAACATTATGAACTATCCATTACCCCGGA  80