BAC Information

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BAC

Clone NameB6Ng01-026K21
Chromosome11 (Build37)Y (Build37)
Map Location 41,270,922 - 41,271,9611,870,346 - 1,870,530
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256, LOC100039285
Downstream geneHspd1, LOC100039292, Gabrg2, Gabra1, Gabra6, Gabrb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026K21.bB6Ng01-026K21.g
ACCDH857651DH857652
length1,034494
definitionDH857651|Mus musculus domesticus DNA, BAC clone: B6Ng01-026K21, 5' end.DH857652|Mus musculus domesticus DNA, BAC clone: B6Ng01-026K21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,270,922 - 41,271,961)(1,870,346 - 1,870,530)
sequence
gaattccacttcagagctgcctcatgctctggctgctgtgcattctctat
tatgaagattttactctaaactgaaagcaatagaattaagtaagtatcga
taaggcaggtaactcaacagaatgtttcaagaagtgaaaccaaatttgct
agaatgagatcaagtctctatgtcaaaaactcagtggaaattgattgcaa
aaaaaattacatggtataaatagaacttaatttttaattatgagaattgt
gatttgttttctttaccttaatgcgccacaaatgatacaacgaggatcaa
taaagtcaccttatctcttcgtttgtaaatacagagggctgaattaactc
ataatgaagggattaagttttcttgtgagtgtgtgagtggagagggtttc
tactacatctctgattctctctctcttttttttgccacattgaattacat
ggttttatcttcctcagtctacaaattagaattagtccacaaagcaggtt
gacttgttttgctaagtcgttgatgcttacctttgtgatgctgtgatttt
acagacctatcaatgaagaagttgtagtcattataccaccaagttcctct
tgttctaagccttttctgttttttttttctttattattttagtgtctgcc
taaggccagcatgtaccagatatgtttcatttctatgaagctgtagcaat
agtttcagattttttctctctcactgttcttgacagttcttatttctaga
ctggttggtatgtttattctgtctgccctgaagctagaacatcatatatt
ctattacctaaacaattatagagctttaaaaccttcaaaaattccttaaa
atatagatgaagactataaacagcccactttaaaagtccattttcctaaa
tgtgagccattattagtcaatttgtaaagcacaaattccattatacagtg
atggattgctagtaattacttggctttcttcccatctgtctaaaatgaag
tcatggaaaaataaaaatgagtgggttattttaa
tttgttcagttctgagccccattttttaatggggttatttgaattgagaa
caaaacacccatggaaggagttacagggacaaagtttggagctgagatga
aaggatggaccatctagagactgccatatccagggatccaccccataatc
agcttccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtacccaaggagctaaagggatctgcaaccct
ataggcggaacaacattatgaactaaccagtatcccggagctcttgactc
tagctgcatatgtatcaaaagatggcctatttggccatcactggaaagag
aggcccattggacatgcaaactttatatgccccagtacagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_41270922_41271961
seq2: B6Ng01-026K21.b_49_1082

seq1  GAATTCCACTTCAGAGCTGCCTCATGCTCTGGCTGCTGTGCATTCTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTCAGAGCTGCCTCATGCTCTGGCTGCTGTGCATTCTCTAT  50

seq1  TATGAAGATTTTACTCTAAACTGAAAGCAATAGAATTAAGTAAGTATCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGATTTTACTCTAAACTGAAAGCAATAGAATTAAGTAAGTATCGA  100

seq1  TAAGGCAGGTAACTCAACAGAATGTTTCAAGAAGTGAAACCAAATTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCAGGTAACTCAACAGAATGTTTCAAGAAGTGAAACCAAATTTGCT  150

seq1  AGAATGAGATCAAGTCTCTATGTCAAAAACTCAGTGGAAATTGATTGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAGATCAAGTCTCTATGTCAAAAACTCAGTGGAAATTGATTGCAA  200

seq1  AAAAAATTACATGGTATAAATAGAACTTAATTTTTAATTATGAGAATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTACATGGTATAAATAGAACTTAATTTTTAATTATGAGAATTGT  250

seq1  GATTTGTTTTCTTTACCTTAATGCGCCACAAATGATACAACGAGGATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTTTTCTTTACCTTAATGCGCCACAAATGATACAACGAGGATCAA  300

seq1  TAAAGTCACCTTATCTCTTCGTTTGTAAATACAGAGGGCTGAATTAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCACCTTATCTCTTCGTTTGTAAATACAGAGGGCTGAATTAACTC  350

seq1  ATAATGAAGGGATTAAGTTTTCTTGTGAGTGTGTGAGTGGAGAGGGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAAGGGATTAAGTTTTCTTGTGAGTGTGTGAGTGGAGAGGGTTTC  400

seq1  TACTACATCTCTGATTCTCTCTCTCTTTTTTTTGCCACATTGAATTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACATCTCTGATTCTCTCTCTCTTTTTTTTGCCACATTGAATTACAT  450

seq1  GGTTTTATCTTCCTCAGTCTACAAATTAGAATTAGTCCACAAAGCAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATCTTCCTCAGTCTACAAATTAGAATTAGTCCACAAAGCAGGTT  500

seq1  GACTTGTTTTGCTAAGTCGTTGATGCTTACCTTTGTGATGCTGTGATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTTTTGCTAAGTCGTTGATGCTTACCTTTGTGATGCTGTGATTTT  550

seq1  ACAGACCTATCAATGAAGAAGTTGTAGTCATTATACCACCAAGTTCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCTATCAATGAAGAAGTTGTAGTCATTATACCACCAAGTTCCTCT  600

seq1  TGTTCTAAGCCTTTTCTGTTTTTTTTTTCTTTATTATTTTAGTGTCTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAAGCCTTTTCTGTTTTTTTTTTCTTTATTATTTTAGTGTCTGCC  650

seq1  TAAGGCCAGCATGTACCAGATATGTTTCATTTCTATGAAGCTGTAGCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCCAGCATGTACCAGATATGTTTCATTTCTATGAAGCTGTAGCAAT  700

seq1  AGTTTCAGATTTTTTCTCTCTCACTGTTCTTGACAGTTCTTATTTCTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGATTTTTTCTCTCTCACTGTTCTTGACAGTTCTTATTTCTAGA  750

seq1  CTGGTTGGTATGTTTATTCTGTCTGCCCTGAAGCTAGAACATCATATATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGGTATGTTTATTCTGTCTGCCCTGAAGCTAGAACATCATATATT  800

seq1  CTATTACCTAAACAATTATAGAGCTTTAAAACCTTCAAAAATTCCTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTACCTAAACAATTATAGAGCTTTAAAACCTTCAAAAATTCCTTAAA  850

seq1  ATATAGATGAAGACTATAAACAGCCCACTTTAAAAGTCCATTTTCCTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGATGAAGACTATAAACAGCCCACTTTAAAAGTCCATTTTCCTAAA  900

seq1  TGTGAGCCATTATTTAGTCAATTTGTTAAAGCACAAATTCCATTATACAG  950
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  TGTGAGCCATTA-TTAGTCAATTTG-TAAAGCACAAATTCCATTATACAG  948

seq1  TTGATGGATTGCTAGTAATTACTTGGCTTTCTTCCCATCTGTCTAAAAAT  1000
       ||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  -TGATGGATTGCTAGTAATTACTTGGCTTTCTTCCCATCTGTCT-AAAAT  996

seq1  GAAGTCCATGGAAAAAATAAAAATGAGTGTGTTATTTTAA  1040
      ||||| ||||| ||||||||||||||||| ||||||||||
seq2  GAAGT-CATGG-AAAAATAAAAATGAGTGGGTTATTTTAA  1034

seq1: chrY_1870346_1870530
seq2: B6Ng01-026K21.g_382_566

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGCGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||||| || ||| |||||||||||||| |||||||
seq2  ACAACATTATGAACTAACCAGTATCCCGGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | |||||||||||||||||| | |||||||||||||||||||||||||||
seq2  ATGTATCAAAAGATGGCCTATTTGGCCATCACTGGAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGA  185
      |||||||||||||||||||||||||||||||||||
seq2  GGACATGCAAACTTTATATGCCCCAGTACAGGGGA  185