BAC Information

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BAC

Clone NameB6Ng01-026P18
ChromosomeY (Build37)2 (Build37)
Map Location 1,870,441 - 1,870,65799,558,632 - 99,559,662
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026P18.bB6Ng01-026P18.g
ACCDH857859DH857860
length9231,026
definitionDH857859|Mus musculus domesticus DNA, BAC clone: B6Ng01-026P18, 5' end.DH857860|Mus musculus domesticus DNA, BAC clone: B6Ng01-026P18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,441 - 1,870,657)(99,558,632 - 99,559,662)
sequence
gaattcctcagtgtttgtttctgtgtcattcttttggcttctgatttcgt
taatttgaatattccccctctacctttacttaatttgaataaggctttgt
ctatcttgttgacttttgcaaagtaacatgtttcagagatttcttgtgtt
gatctgtttgttcctattttattgacactagccatcaggttgattgtttc
ctgtaatttatttccattaggtatgcatacttctatttgttctagagctt
ttaggtgtgataagtcgctaggttggatatctccaacttttttttttcca
ttttttattaggtatttagctcatttacatttccagtgctataccaaaag
tctcccatagccacccactcccactcccctacccacccacttcccctttt
tggccctggcgttcccctgtactggggcatataaagtttgcgtgtccaat
gggcctctctttccagtgatggccgactaggccatcttttgatacatatg
cagcaagagtcaagagctccggggtacacagtatctccaacttttttttt
atgtagacactttcaacactgctttttgtgtgtgtgtcccgtatgttcgt
gcatcatgtgtattcaattccatttagcgccagaacatttttaatttctt
tatttctgttttgacccctattttatggaacagagagttgttcagtttcc
acgagttggaaagtttttcattgtttctgttactcatgacgtccaagttt
aattcatggtgtgttaataagatacaggattttttttttcttttcttatt
gtctattgaggcttactttgtatctaagtatggggtaaattttggagaaa
cctaagtgaggtactgagaaaagatacattcttttgtgtttgtgggatgg
cctgtaatatgttagtgcattgg
gaattccctccagtgactggtactgttttctgatagatcattttaactaa
atggaacatgttcctctgggaaggaacacctgttcaaactcatcaccagg
tatatagatttgtaaatgggcgtcacagttctgttcagtggaaggaactc
aagatggcaccatggctctgaccaagacgctccttaatcagccatattgt
attctcactcaggcttgagctgttactattttcccagcgggttttttttt
ttttgtaaaaattataatgctgaattaaatatcctactctttatatttct
ttaccattttagttacttttattatggtttaaatactataatttcatttt
aatctattaaaatcaacacaactaaaggaaataggacaaaatggcataag
ctgaagaagaaagatgtttgcacgtgtcattcacatacaaagaagcaggc
aagaatttgcatacatatagccaaaaatgaattgtaattatttaaataat
gacatttaaggaagaaaaatcatcattgaatttgtgaagaaatgaataac
aattttgtacttactcaatttaaaaactgaatatatccttgagcatatag
agctttctttccaacttgctattgatagaagtaaacttgaaaataatatg
ataagttttaattttttgcaattatattaatttactccaaattatatatt
aaaaatgaaaaatcccaaatatatatatatgtatatatatatatatatat
atatatatatatatatatacatacatacatatattcatgtttagaaagag
catttccagttctgctctttgtgtttcctcatatcaaatatgattttgga
tgtgtatatatatacatatatgtatatatacacatatatacatacacata
tatatgtgtgtgtatataaaatctgcatgtgaaaaacacccttatatatt
tatatacacatgaagcgtatgtataatatactggtgtttctacatttatt
acccataagtagcattccgtacattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870441_1870657
seq2: B6Ng01-026P18.b_331_545 (reverse)

seq1  TGCATAGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGC  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGC  50

seq1  CCATTGGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGC  100
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGC  100

seq1  CAAAAAGGGGCAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGCTATGGGG  150
      |||||||||| |||||||||||||||||||||| ||||||||||||||| 
seq2  CAAAAAGGGGAAGTGGGTGGGTAGGGGAGTGGGAGTGGGTGGCTATGGGA  150

seq1  GACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTTA-AAAA  199
      |||||||||||||||| |||||||||||||||||||||||||| | ||||
seq2  GACTTTTGGTATAGCACTGGAAATGTAAATGAGCTAAATACCTAATAAAA  200

seq1  AATGGAAAAGAGAAAAAA  217
      |||||||||   ||||||
seq2  AATGGAAAA---AAAAAA  215

seq1: chr2_99558632_99559662
seq2: B6Ng01-026P18.g_70_1095 (reverse)

seq1  AAATGTACTGGATTGCTTACTTATGGGTAAATAAATGTAGAAATACATGT  50
      |||||||| ||| ||| ||||||||||| |||||||||||||| ||  ||
seq2  AAATGTAC-GGAATGC-TACTTATGGGT-AATAAATGTAGAAACACCAGT  47

seq1  ATATTTATATATACGCTTCATGTGTATATAAATATATAAGGGTGTGTTTT  100
      ||| ||||| ||||||||||||||||||||||||||||||||||| ||||
seq2  ATA-TTATACATACGCTTCATGTGTATATAAATATATAAGGGTGT-TTTT  95

seq1  CACAATGCAGATTTTATATACACACACATATATATGTGTATGTATATATG  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAC-ATGCAGATTTTATATACACACACATATATATGTGTATGTATATATG  144

seq1  TGTATATATACATATATGTATATATATACACATCCAAAATCATATTTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATATACATATATGTATATATATACACATCCAAAATCATATTTGAT  194

seq1  ATGAGGAAACACAAAGAGCAGAACTGGAAATGCTCTTTC-AAACATGATT  249
      ||||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  ATGAGGAAACACAAAGAGCAGAACTGGAAATGCTCTTTCTAAACATGAAT  244

seq1  ATATGTATGTATGTATATATATATATATATATATATATATATATATATAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATGTATGTATATATATATATATATATATATATATATATATATAT  294

seq1  ACATATATATATATTTGGGATTTTTCATTTTTAATATATAATTTGGAGTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATATATATTTGGGATTTTTCATTTTTAATATATAATTTGGAGTA  344

seq1  AATTAATATAATTGCAAAAAATTAAAACTTATCATATTATTTTCAAGTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATATAATTGCAAAAAATTAAAACTTATCATATTATTTTCAAGTTT  394

seq1  ACTTCTATCAATAGCAAGTTGGAAAGAAAGCTCTATATGCTCAAGGATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTATCAATAGCAAGTTGGAAAGAAAGCTCTATATGCTCAAGGATAT  444

seq1  ATTCAGTTTTTAAATTGAGTAAGTACAAAATTGTTATTCATTTCTTCACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTTTTTAAATTGAGTAAGTACAAAATTGTTATTCATTTCTTCACA  494

seq1  AATTCAATGATGATTTTTCTTCCTTAAATGTCATTATTTAAATAATTACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAATGATGATTTTTCTTCCTTAAATGTCATTATTTAAATAATTACA  544

seq1  ATTCATTTTTGGCTATATGTATGCAAATTCTTGCCTGCTTCTTTGTATGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTTTGGCTATATGTATGCAAATTCTTGCCTGCTTCTTTGTATGT  594

seq1  GAATGACACGTGCAAACATCTTTCTTCTTCAGCTTATGCCATTTTGTCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACACGTGCAAACATCTTTCTTCTTCAGCTTATGCCATTTTGTCCT  644

seq1  ATTTCCTTTAGTTGTGTTGATTTTAATAGATTAAAATGAAATTATAGTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTTAGTTGTGTTGATTTTAATAGATTAAAATGAAATTATAGTAT  694

seq1  TTAAACCATAATAAAAGTAACTAAAATGGTAAAGAAATATAAAGAGTAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCATAATAAAAGTAACTAAAATGGTAAAGAAATATAAAGAGTAGG  744

seq1  ATATTTAATTCAGCATTATAATTTTTACAAAAAAAAAAAAACCCGCTGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAATTCAGCATTATAATTTTTACAAAAAAAAAAAAACCCGCTGGG  794

seq1  AAAATAGTAACAGCTCAAGCCTGAGTGAGAATACAATATGGCTGATTAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTAACAGCTCAAGCCTGAGTGAGAATACAATATGGCTGATTAAG  844

seq1  GAGCGTCTTGGTCAGAGCCATGGTGCCATCTTGAGTTCCTTCCACTGAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGTCTTGGTCAGAGCCATGGTGCCATCTTGAGTTCCTTCCACTGAAC  894

seq1  AGAACTGTGACGCCCATTTACAAATCTATATACCTGGTGATGAGTTTGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGTGACGCCCATTTACAAATCTATATACCTGGTGATGAGTTTGAA  944

seq1  CAGGTGTTCCTTCCCAGAGGAACATGTTCCATTTAGTTAAAATGATCTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTTCCTTCCCAGAGGAACATGTTCCATTTAGTTAAAATGATCTAT  994

seq1  CAGAAAACAGTACCAGTCACTGGAGGGAATTC  1031
      ||||||||||||||||||||||||||||||||
seq2  CAGAAAACAGTACCAGTCACTGGAGGGAATTC  1026