BAC Information

Click to search

BAC

Clone NameB6Ng01-027K04
ChromosomeY (Build37)1 (Build37)
Map Location 573,321 - 573,63533,588,974 - 33,590,064
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027K04.bB6Ng01-027K04.g
ACCDH858329DH858330
length9521,076
definitionDH858329|Mus musculus domesticus DNA, BAC clone: B6Ng01-027K04, 5' end.DH858330|Mus musculus domesticus DNA, BAC clone: B6Ng01-027K04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,635)(33,588,974 - 33,590,064)
sequence
gaattctctcatctgtctgcttaggaaattattagccactttcacttctt
tttttaaaatttattaggtattttcttcatttacatttcaaatgctatcc
caaaagtcccccataccccccactcccctgctcacccactcccacttctt
ggccctggtgttcccctgtactgaggcatataaagtttgcaagaccaagg
ggcctgtcttcccaatgatggcgactaggccatcttctgctatataggca
gctagagacacaagctccgggggtactggttagctgatattgttgttcca
cctatagggttgcagatccctttagctccttgggtactttctctagctcc
tccattgggggatctgtgatccatccaatagctgactgtgagcatccact
tcagtgtttgctaggccctagcatagcctcacaagagacagctatatcag
ggtcctttcagcagaatcttgctagtgtatgcaatacaatatatataaag
aactcaagaaggcagactccagaaaatcaaataacaccattaaaaatggg
gctcagagctaaacaaagaattctcacctgaggaataccaaatggctgag
aagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaat
tgatcacttctggtcggtgccagcaccaggtcaccttgggcgcagagtcg
gcagacacccccaaggtcccctagagaactctccattcgatcttaggacc
ggtaagtggaacaaaattctgttccaattcaatcatgcgagggacctgag
acagcattagagaagcagaaaagccggcctgaccagggtcacaagtccct
tccagtcagagccagcactgggtcaccttgggcatggagtcggcggacac
ccccaagtccctggagacagcttctgagtcagaccccattttgggatcca
ga
gaattctgtaagtcaacttgaatacttggctatccttggctaattcaata
agaatatgtaaactatttgtttacacatttatactatttatagatttata
ctacacacacagtgcatatgtatatctatgtgtgtgtctataaataaata
aataaacaaacaaatagaactatttatacatttataccatctcctgacta
tttgatctcaggtattaaagtataaatgattgtgactcttttatttgctc
cgagtcattctctctacatttttatttagcctacttatatttacaagact
tacatagtcaaaaatactgtttctctttacagtttctaagttttaagttt
ttaaagatttatttattttatgagtattctgcatgtctatatgtgtgggc
accatgttctagctttgtgggaagaggtcaactggaactggcttgtgagc
cttcttgttgtttcgggaactgacccctggtcctgtgcaaaagcagccag
tgttcttacccaccgtaccatctctgtccccaagcttccctttctccctt
gtcactcagaaattttatattcaggcattattgtttttcatcttttccac
tgcttcttttcctttcctttgctcccctggggtcagggactttcattttt
ccatgtaattgattttgtggggcaaggctgtgaggtgtggttaaggctag
tattcctggtgtctactagcattcatcctatatacatatgcttcacctcc
tagagctgcactcacaggtcaagaaacccagacctcaagtttgagtatgt
tgttcaatcttcactctctgacccttctaagtcttttgatttttatcttc
aaagtatctctcttacttcactagcttgttatccattttccttaactcat
gctttccctctgatgtagttcacactcctgccgatgtgattatgttcttg
gctttagctgctctctgtctgttgccttcacccctccattctgcttaagc
ctaacctggtgcctactctggaattccgctggaagacaataccggagaag
gatgtgtgtctttaggtcaggcatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573635
seq2: B6Ng01-027K04.b_89_392 (reverse)

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCT  50

seq1  ATAGATGGAACAACAATATGA-ATAACCAGTATCCACAGAGCTCATGTCT  99
      |||| |||||||||||||| |  ||||||||| || | |||||  |||||
seq2  ATAGGTGGAACAACAATATCAGCTAACCAGTACCCCCGGAGCTTGTGTCT  100

seq1  CTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAAGA  149
      |||||||| ||| || ||||||||||||||| | ||||||||||||||||
seq2  CTAGCTGCCTATATAGCAGAAGATGGCCTAG-TCGCCATCATTGGGAAGA  149

seq1  GAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAACACC  199
       ||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGGCCCCTTGGTCTTGCAAACTTTATATGCCTCAGTACAGGGGAACACC  199

seq1  AGGGCCAAGAAGTGGGAGAAGGTGGGTAGGGTAGCAAGGCAGGGGGAGGA  249
      ||||||||||||||||||  ||||        |||| || || ||| || 
seq2  AGGGCCAAGAAGTGGGAGTGGGTG--------AGCAGGGGAGTGGG-GGG  240

seq1  TATAGGGGACTTTTGGGATAGCATTTGAAATGTAAATGAAGAAAATAACT  299
      ||| ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TATGGGGGACTTTTGGGATAGCATTTGAAATGTAAATGAAGAAAATACCT  290

seq1  AATAAAAAATTTAAAA  315
      |||  ||| |||||||
seq2  AAT--AAATTTTAAAA  304

seq1: chr1_33588974_33590064
seq2: B6Ng01-027K04.g_70_1145 (reverse)

seq1  ACATGACACCTGACCTAAAGGACACACAACCATTCTCCAGTTATAGTTCT  50
      |||||   ||||||||||| |||||||| || |||||| | ||| | |||
seq2  ACATG---CCTGACCTAAA-GACACACATCC-TTCTCC-GGTATTG-TCT  43

seq1  TACCAGCAGGAATTCCAGAGTAGGCACCAGGCTCAGGCTTTAAGCAGAAT  100
      | ||||| ||||||||||||||||||||||| | |||| |||||||||||
seq2  T-CCAGC-GGAATTCCAGAGTAGGCACCAGG-TTAGGC-TTAAGCAGAAT  89

seq1  GAAGGGGGTGGAGGGCAACAGACAGAGAGCAGCTAAAGCCAAGAACATAA  150
      | |||||   || |||||||||||||||||||||||||||||||||||||
seq2  GGAGGGG--TGAAGGCAACAGACAGAGAGCAGCTAAAGCCAAGAACATAA  137

seq1  TCACATCTGGCAGGAGTGTGAACTACATCAGAGGGAAAAGCATGAGTTAA  200
      ||||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  TCACATC-GGCAGGAGTGTGAACTACATCAGAGGG-AAAGCATGAGTTAA  185

seq1  GGAAAATGGATAACAAGCTAGTGAAGTAAGAGAGATACTTTGAAGATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATGGATAACAAGCTAGTGAAGTAAGAGAGATACTTTGAAGATAAA  235

seq1  AATCAAAAGACTTAGAAGGGTCAGAGAGTGAAGATTGAACAACATACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAAGACTTAGAAGGGTCAGAGAGTGAAGATTGAACAACATACTCA  285

seq1  AACTTGAGGTCTGGGTTTCTTGACCTGTGAGTGCAGCTCTAGGAGGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAGGTCTGGGTTTCTTGACCTGTGAGTGCAGCTCTAGGAGGTGAA  335

seq1  GCATATGTATATAGGATGAATGCTAGTAGACACCAGGAATACTAGCCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGTATATAGGATGAATGCTAGTAGACACCAGGAATACTAGCCTTA  385

seq1  ACCACACCTCACAGCCTTGCCCCACAAAATCAATTACATGGAAAAATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACCTCACAGCCTTGCCCCACAAAATCAATTACATGGAAAAATGAA  435

seq1  AGTCCCTGACCCCAGGGGAGCAAAGGAAAGGAAAAGAAGCAGTGGAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTGACCCCAGGGGAGCAAAGGAAAGGAAAAGAAGCAGTGGAAAAG  485

seq1  ATGAAAAACAATAATGCCTGAATATAAAATTTCTGAGTGACAAGGGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAACAATAATGCCTGAATATAAAATTTCTGAGTGACAAGGGAGAA  535

seq1  AGGGAAGCTTGGGGACAGAGATGGTACGGTGGGTAAGAACACTGGCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGCTTGGGGACAGAGATGGTACGGTGGGTAAGAACACTGGCTGCT  585

seq1  TTTGCACAGGACCAGGGGTCAGTTCCCGAAACAACAAGAAGGCTCACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACAGGACCAGGGGTCAGTTCCCGAAACAACAAGAAGGCTCACAAG  635

seq1  CCAGTTCCAGTTGACCTCTTCCCACAAAGCTAGAACATGGTGCCCACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCCAGTTGACCTCTTCCCACAAAGCTAGAACATGGTGCCCACACA  685

seq1  TATAGACATGCAGAATACTCATAAAATAAATAAATCTTTAAAAACTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACATGCAGAATACTCATAAAATAAATAAATCTTTAAAAACTTAAA  735

seq1  ACTTAGAAACTGTAAAGAGAAACAGTATTTTTGACTATGTAAGTCTTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGAAACTGTAAAGAGAAACAGTATTTTTGACTATGTAAGTCTTGTA  785

seq1  AATATAAGTAGGCTAAATAAAAATGTAGAGAGAATGACTCGGAGCAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAGTAGGCTAAATAAAAATGTAGAGAGAATGACTCGGAGCAAATA  835

seq1  AAAGAGTCACAATCATTTATACTTTAATACCTGAGATCAAATAGTCAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTCACAATCATTTATACTTTAATACCTGAGATCAAATAGTCAGGA  885

seq1  GATGGTATAAATGTATAAATAGTTCTATTTGTTTGTTTATTTATTTATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTATAAATGTATAAATAGTTCTATTTGTTTGTTTATTTATTTATTT  935

seq1  ATAGACACACACATAGATATACATATGCACTGTGTGTGTAGTATAAATCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACACACACATAGATATACATATGCACTGTGTGTGTAGTATAAATCT  985

seq1  ATAAATAGTATAAATGTGTAAACAAATAGTTTACATATTCTTATTGAATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAGTATAAATGTGTAAACAAATAGTTTACATATTCTTATTGAATT  1035

seq1  AGCCAAGGATAGCCAAGTATTCAAGTTGACTTACAGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGGATAGCCAAGTATTCAAGTTGACTTACAGAATTC  1076