BAC Information

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BAC

Clone NameB6Ng01-028C11
Chromosome7 (Build37)Y (Build37)
Map Location 95,940,298 - 95,941,4661,870,346 - 1,870,525
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGrm5, Ctsc, LOC100039756, Rab38, LOC100039924, LOC666598, EG621562
Downstream geneTmem135, LOC100039969, Fzd4, Prss23, LOC100040001, Me3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028C11.bB6Ng01-028C11.g
ACCDH858706DH858707
length1,154494
definitionDH858706|Mus musculus domesticus DNA, BAC clone: B6Ng01-028C11, 5' end.DH858707|Mus musculus domesticus DNA, BAC clone: B6Ng01-028C11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(95,940,298 - 95,941,466)(1,870,346 - 1,870,525)
sequence
gaattcagaaaggatgagaaagtaaagagactttttttttagaatttaga
cgttaattagaatgtctagtataaggttatgataaaaagaataaagtatt
gagttgttttctttaatttaaatgttttataggtaacaaatccacttatc
ttctgaacctatatggacttgacttatcaacacacacatttgcatgtata
aaaatgattagttataatcagttgcattgcagagaattgaatgttgcagt
gagagtgaagaacattatcttaaattttaattaagtattaaaacttgctt
cttcattttctttattagaatattatatctttgggccaaaggtaatgaat
agaagaggttattgctacaatgagggcacagcagtaggcaattctaatat
taatttatgatagtgacttttgcaatcagatatctggaagcatgcacaca
tcctgaggctacatcctgattatttctcagttgtgtcctcttaggggcat
tcagggatctcctgcaatatgccattatggatttatactcttatccctaa
attctctgaacatgccatggcatactaataagagtaacagatacactgta
ttagaaacttgctttggactggaaattttgtataggttaccctatatatc
ctaaaagcagtcctatggtaaatcaacataatctcccagtatggatcagc
ctatttgacgccaaagtatttgtccttgaactctaggacattcaattccc
aaactgtagccctttccattttaccaacatttttgatctcttgaaacctt
gcttgcatgagtattctccttgtttcaatgtttgtcattatttatttgac
taaaagcatttaatttttctatttatttatcttttctgatagacaagaag
taatttttaattcaattttatacaatttttattcaattcattcaaatagc
atcatctttttcccagcatgtagatctagatgtatctcagttaggatatt
caaatgctttgtctgtagaaatttgaatttaattagtatgcctttgcatc
tggtgatagctggaattggtaatttctagaataacaactacaagactcta
gttcctgaatcatatctggagattcttttctttctttcctgacattgtat
taaa
cttagcctgataatcagcttcagtgaagtagctggatataaaattaactc
aaacaagtcaatggcctttctgtacacaaaggataaacaggctgagaaag
aaactagggaaacaacccttctcaatagtcacaaataatataaaatacct
tggcatgactctaactaaggaagtgaaagatctgtatgataaaaactttg
ctgaaaggacccagatatagctgtctcttgtgagactatgccagggccta
gcaaacacagaagtggatgctcacagtcagctattggatggatcacaggg
ctcccaaaggaggaactagagaagtacccaaggagctaaagggatctgca
accctataggtggaacaacattatgaactaaccagtaccccagagctctt
gactctagctgcatatgcatcaaaagatggcctagtcggccatcactgga
aagagaggcccattggacacacaaactttatatgccccagtaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_95940298_95941466
seq2: B6Ng01-028C11.b_44_1197 (reverse)

seq1  TTTAATATCAATGGTCAGGAAAGAAAAGAAAAAGAATACTTCCAGATATA  50
      ||||||| |||| |||||||||||||   ||||||||   ||||||||| 
seq2  TTTAATA-CAAT-GTCAGGAAAGAAA--GAAAAGAAT--CTCCAGATAT-  43

seq1  GATATCAGGAACTAAGAGTCTTTGTAGTTGTTTATTCTAGATATTAACAA  100
      ||| ||||||||| |||||| ||||||||| |||||||||| ||| || |
seq2  GAT-TCAGGAACT-AGAGTC-TTGTAGTTG-TTATTCTAGAAATT-ACCA  88

seq1  ATTCCAGCTATCACCAGATGCAAAGGCATACTATATAAAATTCAAAATTT  150
      ||||||||||||||||||||||||||||||||| || |||||| ||||||
seq2  ATTCCAGCTATCACCAGATGCAAAGGCATACTA-ATTAAATTC-AAATTT  136

seq1  CTACAGACAAAGCATTTGAATATCCTAACTGAGATACATCTAGATCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGACAAAGCATTTGAATATCCTAACTGAGATACATCTAGATCTACA  186

seq1  TGCTGGGAAAAAGATGATGCTATTTGAATGAATTGAATAAAAAATTGTAT  250
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGCTGGGAAAAAGATGATGCTATTTGAATGAATTGAAT-AAAAATTGTAT  235

seq1  AAAATTGAATTAAAAATTACTTCTTGTCTATCAGAAAAGATAAATAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGAATTAAAAATTACTTCTTGTCTATCAGAAAAGATAAATAAATA  285

seq1  GAAAAATTAAATGCTTTTAGTCAAATAAATAATGACAAACATTGAAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTAAATGCTTTTAGTCAAATAAATAATGACAAACATTGAAACAA  335

seq1  GGAGAATACTCATGCAAGCAAGGTTTCAAGAGATCAAAAATGTTGGTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATACTCATGCAAGCAAGGTTTCAAGAGATCAAAAATGTTGGTAAA  385

seq1  ATGGAAAGGGCTACAGTTTGGGAATTGAATGTCCTAGAGTTCAAGGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGGGCTACAGTTTGGGAATTGAATGTCCTAGAGTTCAAGGACAA  435

seq1  ATACTTTGGCGTCAAATAGGCTGATCCATACTGGGAGATTATGTTGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTGGCGTCAAATAGGCTGATCCATACTGGGAGATTATGTTGATTT  485

seq1  ACCATAGGACTGCTTTTAGGATATATAGGGTAACCTATACAAAATTTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGGACTGCTTTTAGGATATATAGGGTAACCTATACAAAATTTCCA  535

seq1  GTCCAAAGCAAGTTTCTAATACAGTGTATCTGTTACTCTTATTAGTATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAAGCAAGTTTCTAATACAGTGTATCTGTTACTCTTATTAGTATGC  585

seq1  CATGGCATGTTCAGAGAATTTAGGGATAAGAGTATAAATCCATAATGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCATGTTCAGAGAATTTAGGGATAAGAGTATAAATCCATAATGGCA  635

seq1  TATTGCAGGAGATCCCTGAATGCCCCTAAGAGGACACAACTGAGAAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCAGGAGATCCCTGAATGCCCCTAAGAGGACACAACTGAGAAATAA  685

seq1  TCAGGATGTAGCCTCAGGATGTGTGCATGCTTCCAGATATCTGATTGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATGTAGCCTCAGGATGTGTGCATGCTTCCAGATATCTGATTGCAA  735

seq1  AAGTCACTATCATAAATTAATATTAGAATTGCCTACTGCTGTGCCCTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACTATCATAAATTAATATTAGAATTGCCTACTGCTGTGCCCTCAT  785

seq1  TGTAGCAATAACCTCTTCTATTCATTACCTTTGGCCCAAAGATATAATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAATAACCTCTTCTATTCATTACCTTTGGCCCAAAGATATAATAT  835

seq1  TCTAATAAAGAAAATGAAGAAGCAAGTTTTAATACTTAATTAAAATTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAAAGAAAATGAAGAAGCAAGTTTTAATACTTAATTAAAATTTAA  885

seq1  GATAATGTTCTTCACTCTCACTGCAACATTCAATTCTCTGCAATGCAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGTTCTTCACTCTCACTGCAACATTCAATTCTCTGCAATGCAACT  935

seq1  GATTATAACTAATCATTTTTATACATGCAAATGTGTGTGTTGATAAGTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATAACTAATCATTTTTATACATGCAAATGTGTGTGTTGATAAGTCA  985

seq1  AGTCCATATAGGTTCAGAAGATAAGTGGATTTGTTACCTATAAAACATTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATATAGGTTCAGAAGATAAGTGGATTTGTTACCTATAAAACATTT  1035

seq1  AAATTAAAGAAAACAACTCAATACTTTATTCTTTTTATCATAACCTTATA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAGAAAACAACTCAATACTTTATTCTTTTTATCATAACCTTATA  1085

seq1  CTAGACATTCTAATTAACGTCTAAATTCTAAAAAAAAAGTCTCTTTACTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACATTCTAATTAACGTCTAAATTCTAAAAAAAAAGTCTCTTTACTT  1135

seq1  TCTCATCCTTTCTGAATTC  1169
      |||||||||||||||||||
seq2  TCTCATCCTTTCTGAATTC  1154

seq1: chrY_1870346_1870525
seq2: B6Ng01-028C11.g_390_568

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAG-AAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  49

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||||| |||||| |||||||||||||| |||||||
seq2  ACAACATTATGAACTAACCAGTACCCCAGAGCTCTTGACTCTAGCTGCAT  99

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  149

seq1  GGACATGCAAACTTTATATGCCCCAGTACA  180
      |||||  |||||||||||||||||||||||
seq2  GGACACACAAACTTTATATGCCCCAGTACA  179