BAC Information

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BAC

Clone NameB6Ng01-032O18
Chromosome18 (Build37)Y (Build37)
Map Location 50,273,148 - 50,274,2991,870,457 - 1,870,497
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDtwd2, Dmxl1, Tnfaip8
Downstream geneHsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a, LOC100042373, LOC100042385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032O18.bB6Ng01-032O18.g
ACCDH862120DH862121
length1,132348
definitionDH862120|Mus musculus domesticus DNA, BAC clone: B6Ng01-032O18, 5' end.DH862121|Mus musculus domesticus DNA, BAC clone: B6Ng01-032O18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,273,148 - 50,274,299)(1,870,457 - 1,870,497)
sequence
gaattcagtaaaaacaaaaagatgccaaatttctccacttctgtttcagc
agagggaaacaacataagaaaattgaaatgtgatgtctaaattcatatgc
atattctcgtgttgcacacagggaggaacagaaataatgacacaacttga
gatgtccctcttttaaatcctgaatgggattaacatatctcaattaaatg
catcagaaatggactctgtttgcaaaggaagacgaactggctgcatggtt
taaatgttctatgtttctttagggaccttctcaatgggtagcgtcaagag
catttgttaagatgagaccacttcaggccagggggtttgaatggcctcct
ttaactgtcctgatgcttccatgaggtcacggtgactgtggcatttgtct
catccttcatgctgggaaaacgtaagcatcttccccaagatccttccctc
acattgttcaagtctgcttacagttccatataaaagttcaccatcaaaac
cactgagagcaggaccgcacacatgacagggacttggaggcaagctggtg
cagagaccatagaggagcgctgcttactgacttgctcttcatggcttgct
tagcctgatttcttatagagttcaggaccatcagcccaggggcggcacca
cccagaatgggctgggtcctccaccatcgatcactaattaagaaaatacc
ttacagacctgcctacagctgaatcttatgaagatgctttcttagttgag
cttccctcttctcagatgacgtcagcctgtcataagtcgacataaaacta
cccaacacttccccagaacaactattctttaaactgacaatttagggaga
ggtattaaacccatagtttacactatgaatgctacacacaattaagtata
aatataacccatcacatagaatgtaaagttgtaattattgtgttgttcat
agtagactgttgacccctccttatatattatataaatataattatagttt
aaattttaaatttatacttatcaatactctactgagaataccaggaactt
cttttaaagggaataaaactttcccagtctatataggtaaaaaagatagg
agtgtggatcctacctaggcaagtaatgcctt
tgagctgacatctatggtgtcttagagcctcaatgcccttctggctttta
gagtattcattaagaaatctggtgtacagccgggcatggtggtacacgcc
tttaatcccagcactcgggagacagaggcaggtggatttctgagttagag
gccagcctggcctacgaagtgtttccaggacagccagggctacacagaga
aaaccggtctcaaaacaaaacaaaacaaaaaaacaacaacaaaatcaggt
gtaaaatcaaagaaaacacatggtgaaatttgaggctctagctatatttg
tagcagaggatggcctagtcggtcatcaatgggaggagaggcccttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_50273148_50274299
seq2: B6Ng01-032O18.b_45_1176

seq1  GAATTCAGTAAAAACAAAAAGATGCCAAATTTCTCCACTTCTGTTTCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAAAACAAAAAGATGCCAAATTTCTCCACTTCTGTTTCAGC  50

seq1  AGAGGGAAACAACATAAGAAAATTGAAATGTGATGTCTAAATTCATATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAAACAACATAAGAAAATTGAAATGTGATGTCTAAATTCATATGC  100

seq1  ATATTCTCGTGTTGCACACAGGGAGGAACAGAAATAATGACACAACTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTCGTGTTGCACACAGGGAGGAACAGAAATAATGACACAACTTGA  150

seq1  GATGTCCCTCTTTTAAATCCTGAATGGGATTAACATATCTCAATTAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCCTCTTTTAAATCCTGAATGGGATTAACATATCTCAATTAAATG  200

seq1  CATCAGAAATGGACTCTGTTTGCAAAGGAAGACGAACTGGCTGCATGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAAATGGACTCTGTTTGCAAAGGAAGACGAACTGGCTGCATGGTT  250

seq1  TAAATGTTCTATGTTTCTTTAGGGACCTTCTCAATGGGTAGCGTCAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTCTATGTTTCTTTAGGGACCTTCTCAATGGGTAGCGTCAAGAG  300

seq1  CATTTGTTAAGATGAGACCACTTCAGGCCAGGGGGTTTGAATGGCCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTAAGATGAGACCACTTCAGGCCAGGGGGTTTGAATGGCCTCCT  350

seq1  TTAACTGTCCTGATGCTTCCATGAGGTCACGGTGACTGTGGCATTTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGTCCTGATGCTTCCATGAGGTCACGGTGACTGTGGCATTTGTCT  400

seq1  CATCCTTCATGCTGGGAAAACGTAAGCATCTTCCCCAAGATCCTTCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTCATGCTGGGAAAACGTAAGCATCTTCCCCAAGATCCTTCCCTC  450

seq1  ACATTGTTCAAGTCTGCTTACAGTTCCATATAAAAGTTCACCATCAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTTCAAGTCTGCTTACAGTTCCATATAAAAGTTCACCATCAAAAC  500

seq1  CACTGAGAGCAGGACCGCACACATGACAGGGACTTGGAGGCAAGCTGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGAGCAGGACCGCACACATGACAGGGACTTGGAGGCAAGCTGGTG  550

seq1  CAGAGACCATAGAGGAGCGCTGCTTACTGACTTGCTCTTCATGGCTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACCATAGAGGAGCGCTGCTTACTGACTTGCTCTTCATGGCTTGCT  600

seq1  TAGCCTGATTTCTTATAGAGTTCAGGACCATCAGCCCAGGGGCGGCACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGATTTCTTATAGAGTTCAGGACCATCAGCCCAGGGGCGGCACCA  650

seq1  CCCAGAATGGGCTGGGTCCTCCACCATCGATCACTAATTAAGAAAATACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAATGGGCTGGGTCCTCCACCATCGATCACTAATTAAGAAAATACC  700

seq1  TTACAGACCTGCCTACAGCTGAATCTTATGAAGATGCTTTCTTAGTTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGACCTGCCTACAGCTGAATCTTATGAAGATGCTTTCTTAGTTGAG  750

seq1  CTTCCCTCTTCTCAGATGACGTCAGCCTGTCATAAGTCGACATAAAACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCTTCTCAGATGACGTCAGCCTGTCATAAGTCGACATAAAACTA  800

seq1  CCCAACACTTCCCCAGAACAACTATTCTTTAAAACTGACAATTTAGGGAG  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCCAACACTTCCCCAGAACAACTATTCTTT-AAACTGACAATTTAGGGAG  849

seq1  AGGTATTAAACCCATAGTTTACACTATGAATGCTACACACAATTAAGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTAAACCCATAGTTTACACTATGAATGCTACACACAATTAAGTAT  899

seq1  AAATATAACCAATCACATAGAATGTAAAGTTGTAATTATTGTGTTGTTCC  950
      |||||||||| ||||||||||||||||||||||||||||||||||||| |
seq2  AAATATAACCCATCACATAGAATGTAAAGTTGTAATTATTGTGTTGTT-C  948

seq1  ATAGTAGACTGTTGACCCCTCCTTATATATTATATAAATATAATTTATAG  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATAGTAGACTGTTGACCCCTCCTTATATATTATATAAATATAA-TTATAG  997

seq1  TTTTAAATTTTAAATTTATAATTTATCAATTACCTTCTACTGAGAAATTA  1050
       |||||||||||||||||| | ||||||| |||  |||||||||||    
seq2  -TTTAAATTTTAAATTTAT-ACTTATCAA-TAC--TCTACTGAGAA---T  1039

seq1  ACCAGGAACTTCTTTTAGAAGGAGATTAAAGACTTTCCCAGGTCTATATA  1100
      ||||||||||||||||| |||| || |||| ||||||||| |||||||||
seq2  ACCAGGAACTTCTTTTA-AAGG-GAATAAA-ACTTTCCCA-GTCTATATA  1085

seq1  GGTAAAAAAAAGATAGGAGGTGT-GATCCTACCCTAGGCAGGTAAAATGC  1149
      |||  ||||||||||||| |||| ||||||| |||||||| ||  |||||
seq2  GGT--AAAAAAGATAGGA-GTGTGGATCCTA-CCTAGGCAAGT--AATGC  1129

seq1  CTT  1152
      |||
seq2  CTT  1132

seq1: chrY_1870457_1870497
seq2: B6Ng01-032O18.g_381_420

seq1  GATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGG  41
      |||||||||||||| ||||| ||| | ||||||||| ||||
seq2  GATGGCCTAGTCGGTCATCAATGGGAGGAGAGGCCC-TTGG  40