BAC Information

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BAC

Clone NameB6Ng01-033B19
ChromosomeY (Build37)Y (Build37)
Map Location 1,120,588 - 1,120,788552,831 - 553,559
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033B19.bB6Ng01-033B19.g
ACCDH862256DH862257
length696730
definitionDH862256|Mus musculus domesticus DNA, BAC clone: B6Ng01-033B19, 5' end.DH862257|Mus musculus domesticus DNA, BAC clone: B6Ng01-033B19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,588 - 1,120,788)(552,831 - 553,559)
sequence
gaattctctgtttagctttgtatctcgttttatttatttatttatttatt
tgcctgatatcatgtctttttttaaaatactttttattcggtatttgcct
catttacatttccaatgctatcccaaaagttccccataccctcccaccca
ctcccctacccactcacttccactttttggccctggcgttcacctgtact
ggggcatataaagtttgcaagtccaatgggcatctctttccagtgatggc
caactaggccatcttttgtgtatctcatttttaaattgggttatttgggg
gttttttgaagattaacttcttgagttttttaatatattttggatattag
ccctccatcagatattgggggagtgcagatattttcacaatctgtaggtt
gccattttgtcgtattgatgctgtcctttgccttacagaagcttttcagt
ttcatgaggtgccatttgtcaattcttgatcttagagcctgagatgttgg
tgttctgttcaggaaaattttccccatgctgagagttggaaggctctttc
ccactttttttttctattagattcagtgtatctggtcttatgtttaaagt
tctttgatccacttgaatataagctttgtgcaaggtgataattatggatt
aattttcattcttcagccagacaatggttgcatactcctttaatcc
gaattcaaacttgggcttactcttggttagatgccatcaatggaaagtac
ttttattccttatgtatgtttttacatatgggtgttaaatagatgcagta
tctcatgagggtgagggtacagtcctaaagcatagaacaaacagaaaaga
aattctgaccaaggggaataatcagtcagtggtaggagaaacgactcctt
gacaggacggttaatgtttatttcctatcttctatttaaacctaaacttc
aggttaggccccagagatggacttggaagtgtccctgggataaatttagt
ttgattacaatgaaacctttctgaatgtactcattcaaatcatttgtttg
gcttatccaggactagtggccaagcccattttgctgagacagccacagtg
gttacacataaaaaattgaacacatcaatgtactttattgttagcttgta
caatgtccccttccaagccttaaaagtctccagaaattttgctataataa
ttaccccaagataaagacttaagctatcacttccccaaacaagaacagct
atccctgttcagcaatgggggcatacacctttaatcccattacttggggg
gcagaggtgggcaaatctctgagtttgaggccaacctgatctaatgagtg
aggtccagccaatgctacaaagaaaagaaagaaaaatcctgtccaaaaaa
agaaaaaataggggcggggggtgggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120588_1120788
seq2: B6Ng01-033B19.b_107_308

seq1  -TTTTTTTCCAT--TTTTTATTAGGTATTTAACTCATTTACATTTCCAAT  47
       ||||||   ||  |||||||| |||||||  ||||||||||||||||||
seq2  TTTTTTTAAAATACTTTTTATTCGGTATTTGCCTCATTTACATTTCCAAT  50

seq1  GCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACC  97
      ||||| |||||||| ||||||| || ||||  ||||||||||| ||||| 
seq2  GCTATCCCAAAAGTTCCCCATACCCTCCCA--CCCACTCCCCTACCCACT  98

seq1  CACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGT  147
      |||| || ||||||||||||||  ||| ||||||||||||||||||||||
seq2  CACTTCCACTTTTTGGCCCTGGCGTTCACCTGTACTGGGGCATATAAAGT  148

seq1  TTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCT  197
      ||||||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  TTGCAAGTCCAATGGGCATCTCTTTCCAGTGATGGCCAACTAGGCCATCT  198

seq1  TTTG  201
      ||||
seq2  TTTG  202

seq1: chrY_552831_553559
seq2: B6Ng01-033B19.g_67_795

seq1  GAATTCAAACTTGGGCTTACTCTTGGTTAGATGCCATCAATGGAAAGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTTGGGCTTACTCTTGGTTAGATGCCATCAATGGAAAGTAC  50

seq1  TTTTATTCCTTATGTATGTTTTTACATATGGGTGTTAAATAGATGCAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCCTTATGTATGTTTTTACATATGGGTGTTAAATAGATGCAGTA  100

seq1  TCTCATGAGGGTGAGGGTACAGTCCTAAAGCATAGAACAAACAGAAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGAGGGTGAGGGTACAGTCCTAAAGCATAGAACAAACAGAAAAGA  150

seq1  AATTCTGACCAAGGGGAATAATCAGTCAGTGGTAGGAGAAACGACTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGACCAAGGGGAATAATCAGTCAGTGGTAGGAGAAACGACTCCTT  200

seq1  GACAGGACGGTTAATGTTTATTTCCTATCTTCTATTTAAACCTAAACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGACGGTTAATGTTTATTTCCTATCTTCTATTTAAACCTAAACTTC  250

seq1  AGGTTAGGCCCCAGAGATGGACTTGGAAGTGTCCCTGGGATAAATTTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGGCCCCAGAGATGGACTTGGAAGTGTCCCTGGGATAAATTTAGT  300

seq1  TTGATTACAATGAAACCTTTCTGAATGTACTCATTCAAATCATTTGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTACAATGAAACCTTTCTGAATGTACTCATTCAAATCATTTGTTTG  350

seq1  GCTTATCCAGGACTAGTGGCCAAGCCCATTTTGCTGAGACAGCCACAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATCCAGGACTAGTGGCCAAGCCCATTTTGCTGAGACAGCCACAGTG  400

seq1  GTTACACATAAAAAATTGAACACATCAATGTACTTTATTGTTAGCTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACACATAAAAAATTGAACACATCAATGTACTTTATTGTTAGCTTGTA  450

seq1  CAATGTCCCCTTCCAAGCCTTAAAAGTCTCCAGAAATTTTGCTATAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCCCCTTCCAAGCCTTAAAAGTCTCCAGAAATTTTGCTATAATAA  500

seq1  TTACCCCAAGATAAAGACTTAAGCTATCACTTCCCCAAACAAGAACAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCCAAGATAAAGACTTAAGCTATCACTTCCCCAAACAAGAACAGCT  550

seq1  ATCCCTGTTCAGCAATGGGGGCATACACCTTTAATCCCATTACTTGGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGTTCAGCAATGGGGGCATACACCTTTAATCCCATTACTTGGGGG  600

seq1  GCAGAGGTGGGCAAATCTCTGAGTTTGAGGCCAACCTGATCTAATGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGTGGGCAAATCTCTGAGTTTGAGGCCAACCTGATCTAATGAGTG  650

seq1  AGGTCCAGCCAATGCTACAAAGAAAAGAAAGAAAAATCCTGTCCAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCAGCCAATGCTACAAAGAAAAGAAAGAAAAATCCTGTCCAAAAAA  700

seq1  AGAAAAAATAGGGGCGGGGGGTGGGGGGG  729
      |||||||||||||||||||||||||||||
seq2  AGAAAAAATAGGGGCGGGGGGTGGGGGGG  729