BAC Information

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BAC

Clone NameB6Ng01-033I13
Chromosome3 (Build37)Y (Build37)
Map Location 44,880,853 - 44,881,396573,321 - 573,450
singlet/doubletsingletsinglet
Overlap geneLOC676484
Upstream genenone
Downstream geneLOC100039296, Pcdh10, LOC100039282, LOC433580, LOC671801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033I13.bB6Ng01-033I13.g
ACCDH862557DH862558
length538621
definitionDH862557|Mus musculus domesticus DNA, BAC clone: B6Ng01-033I13, 5' end.DH862558|Mus musculus domesticus DNA, BAC clone: B6Ng01-033I13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,880,853 - 44,881,396)(573,321 - 573,450)
sequence
tgggagcatgaggcctctgcttcctggggatgaaaaagggatgtttcttg
ggtactttcactagctcctccattgggggccctatgatccatccaatagc
tgactgtgagcatccacttctgtgtttgctaggtcccggcatagtctcac
aagagacagctatatctgggtcctttcagcaaaatcttgctagtgtatgc
aatggtgtcatcgtttggaggctaattatgggatggatccctggatatgg
cagtctctagatggcccatccttttgtctcagctccaaactttgtctctg
taactccttccatgggtgttttgttcccaattctaagaaggagcaaagtg
tccacactttggtctttgttcttcttgagtttcatgtgttttgcaaattg
taacttataggtggaacaacattatgaactaaccagtaccccggagctct
tgactctagctgcatatgtatcaaaagatggcctactcggccatcactgg
aaagagaggcccattggacttgcaaactttatatgccc
gaattcactcctagtcactcccattctcggggtgtaatagtggggtgatg
ggcaagcaacgaatcgggagctgtcacgccatatcaggtgccgaaacgtt
aagctgcgggttataaaagcagcgccattttcccggttgggggtcttcct
gagaagcaagcaataaagcttttgccacggaagattctggtttgttgcgt
ctttcttgccggttgagccagacgcaataactgacaccattgcatacact
agcaagattttgctgaaaggaccctgatatagctgtctcttgtgagggta
ttcttgggcctagcaaacacagaagtggatgctcacagtcatttattgca
tggaacacagggcctccaaaggaggagctagagaacgtacccaaggagat
aaagggaactgcaaccctataggtggaacagcaatatgaactaaccagta
tcccccggagctcatgtctctagctgcatatgtatcagaagatggcctag
taggccatcagtggaaaaagaggcccattggtcttgccaacttcattttc
ctaagtacaggtgaatgccaggcccaagaagtgggagtggggctggggaa
gagagggcatagggggacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_44880853_44881396
seq2: B6Ng01-033I13.b_47_590

seq1  GAATTCTGGGAGCATGAGGCCTCTGCTTCCTGGGGATGAAAAAGGGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAGCATGAGGCCTCTGCTTCCTGGGGATGAAAAAGGGATGT  50

seq1  TTCTTGGGTACTTTCACTAGCTCCTCCATTGGGGGCCCTATGATCCATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGGTACTTTCACTAGCTCCTCCATTGGGGGCCCTATGATCCATCC  100

seq1  AATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGTCCCGGCATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGTCCCGGCATAG  150

seq1  TCTCACAAGAGACAGCTATATCTGGGTCCTTTCAGCAAAATCTTGCTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAAGAGACAGCTATATCTGGGTCCTTTCAGCAAAATCTTGCTAGT  200

seq1  GTATGCAATGGTGTCATCGTTTGGAGGCTAATTATGGGATGGATCCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCAATGGTGTCATCGTTTGGAGGCTAATTATGGGATGGATCCCTGG  250

seq1  ATATGGCAGTCTCTAGATGGCCCATCCTTTTGTCTCAGCTCCAAACTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCAGTCTCTAGATGGCCCATCCTTTTGTCTCAGCTCCAAACTTTG  300

seq1  TCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAATTCTAAGAAGGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAATTCTAAGAAGGAGC  350

seq1  AAAGTGTCCACACTTTGGTCTTTGTTCTTCTTGAGTTTCATGTGTTTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTCCACACTTTGGTCTTTGTTCTTCTTGAGTTTCATGTGTTTTGC  400

seq1  AAATTGTAACTTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTAACTTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGG  450

seq1  AGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTACTCGGCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTACTCGGCCAT  500

seq1  CACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCC  544
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCC  544

seq1: chrY_573321_573450
seq2: B6Ng01-033I13.g_437_568

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      | ||||||||||||||| |||||||||||| |||||||| |||||| |||
seq2  AAGGAGGAGCTAGAGAACGTACCCAAGGAGATAAAGGGAACTGCAACCCT  50

seq1  ATAGATGGAACAACAATATGAA-TAACCAGTAT-CCACAGAGCTCATGTC  98
      |||| ||||||| ||||||||| |||||||||| || | |||||||||||
seq2  ATAGGTGGAACAGCAATATGAACTAACCAGTATCCCCCGGAGCTCATGTC  100

seq1  TCTAGCTGCATATGTATCAGAAGATGGCCTAG  130
      ||||||||||||||||||||||||||||||||
seq2  TCTAGCTGCATATGTATCAGAAGATGGCCTAG  132