BAC Information

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BAC

Clone NameB6Ng01-034I09
ChromosomeY (Build37)
Map Location 2,086,667 - 2,087,228
singlet/doubletsinglet
Overlap geneRbmy1a1
Upstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181
Downstream geneLOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034I09.bB6Ng01-034I09.g
ACCDH863251DH863252
length5631,011
definitionDH863251|Mus musculus domesticus DNA, BAC clone: B6Ng01-034I09, 5' end.DH863252|Mus musculus domesticus DNA, BAC clone: B6Ng01-034I09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgaattttaattgtaaccaacaattttttaccttaggaaaaacg
aatggctatgacggagaaattaattcagagtaatcttctgtcatacgttt
gtacaaaattttaaaaatgccatattagtagcctggcggggtggcacacg
cctttaatcccagcacttgggaggcagaggcaggcgaatttctgagttcg
aggccagcctggtctacagagtgagtttcaggacagccagggctacaaag
agagaccctgtctcaacccccccacccacccccaccctccaaaaaaaaca
acaacaacaaaaaaaaaaaaaccaaaaaacaaaaaaaagctgtattagta
aattatatgtaaattggaacatgtatggacgtaaaggagttctgttatcc
tatcaaaagggggaaaagcgctttcatttggaagagtaatattgcttgag
cagaggaaattaggatttaaattatatatttctaaaaaccaggtaggtaa
tatcctttgagttatttgcctctgttttgtggtggtttaatttacatttg
aggtaaactattt
gaattctcctctgaggaaacagactgggaggaagaagcagcccattacca
gccagctaattggtcaagaaaaaagccaaaagcggctggcgaaagccagc
gtactgttcaacctcccggcagtcggtttcaaggtccgccctatgcggag
cccccgccctgcgtagtgcgtcagcaatgcgcagagaggcaatgcgcaga
gagatgcgcagagaggcaatgcgcagagagatgcgcagagaggcaatgcg
cagagagatgcgcagagaggcagtgcgcagagagatgcgcagagaggcag
tgcgcagagagatgcgcagagaggcagtgcgcagagaggcagtgcgcaga
gaggcagtgcgcagagaggcagtgcgcagactcattcattcccagagagg
aacaaaggaaaatacaacaggcatttccggtctttgaaggagccgagggt
gggcgtgtccacgctccggtagaatacttacaaattaaagaaattgccga
gtcggtccgtaaatacggaaccaatgctaattttaccttggtgcagttag
acaggctcgctggcatggcactaactcctgccgactggcaaacggttgta
aaagccgctctccctagtatgggcaaatatatggaatggagagcgctttg
gcacgaagctgcacaagcgcaggcccgagcaaacgcagctgctttgactc
cagagcagagagattggacttttgacttgttaacgggtcagggagcttat
tctgctgatcaaacaaactaccattggggagcttatgcccagatttcttc
cacggctattagggcctggaaggcgctctctcgagcaggtgaaaccactg
gtcagtaacaaagataatccagggacctcatgaatccttctcagattttg
tggccagaatgacagaggcagcgaacgttttttgggagtcagagcaagct
gcgcctcgatagaacagcttatctttgagcaggccactaaaggagtgtcc
gagcgggccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_2086667_2087228
seq2: B6Ng01-034I09.b_32_594

seq1  GAATTCTGAATTTTAATTGTAACCAACAATTTTATACCTTAGGAAAAACG  50
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAATTCTGAATTTTAATTGTAACCAACAATTTTTTACCTTAGGAAAAACG  50

seq1  AATGGCTATGACGGAGAAATTAATTCAGAGTAATCTTCTGTCATACGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTATGACGGAGAAATTAATTCAGAGTAATCTTCTGTCATACGTTT  100

seq1  GTACAAAATTTTAAAAATGCCATATTAGTAGCCTGGCGGGGTGGCACACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAATTTTAAAAATGCCATATTAGTAGCCTGGCGGGGTGGCACACG  150

seq1  CCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGAATTTCTGAGTTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGAATTTCTGAGTTCG  200

seq1  AGGCCAGCCTGGTCTACAGAGTGAGTTTCAGGACAGCCAGGGCTACAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCTGGTCTACAGAGTGAGTTTCAGGACAGCCAGGGCTACAAAG  250

seq1  AGAGACCCTGTCTCAACCCCCCCACCCACCCCCACCCTCCAAAAAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCCTGTCTCAACCCCCCCACCCACCCCCACCCTCCAAAAAAAACA  300

seq1  ACAACAACAAAAAAAAAAAAACCAAAAAACAAAAAAAAGCTGTATTAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACAAAAAAAAAAAAACCAAAAAACAAAAAAAAGCTGTATTAGTA  350

seq1  AATTATATGTAAATTGGAACATGTATGGACGTAAAGGAGTTCTGTTATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATGTAAATTGGAACATGTATGGACGTAAAGGAGTTCTGTTATCC  400

seq1  TATCAAAAGGGGGAAAAGCGCTTTCATTTGGAAGAGTAATATTGCTTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAAGGGGGAAAAGCGCTTTCATTTGGAAGAGTAATATTGCTTGAG  450

seq1  CAGAGGAAATTAGGATTTAAATTATATATTTCTAAAAACCAGGTAGGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAAATTAGGATTTAAATTATATATTTCTAAAAACCAGGTAGGTAA  500

seq1  TATCCTTTGAGTTATTTGCCTCTG-TTTGTGGTGGTTTAATTTACATTTG  549
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TATCCTTTGAGTTATTTGCCTCTGTTTTGTGGTGGTTTAATTTACATTTG  550

seq1  AGGTAAACTATTT  562
      |||||||||||||
seq2  AGGTAAACTATTT  563