BAC Information

Click to search

BAC

Clone NameB6Ng01-037D19
ChromosomeY (Build37)
Map Location 1,120,579 - 1,121,024
singlet/doubletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037D19.bB6Ng01-037D19.g
ACCDH865175DH865176
length1,188977
definitionDH865175|Mus musculus domesticus DNA, BAC clone: B6Ng01-037D19, 5' end.DH865176|Mus musculus domesticus DNA, BAC clone: B6Ng01-037D19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctacataatttatgactgctgggagagggaaaattacccccttcc
tggaatgggcccctgtagtagtttaaaaaagaatggctctcatatagatt
cagtctttaattcacagtttgcgtcactctttgggaataattaagaagta
tggccttgttggaaggagtgcatcactgggctaggagctgaggtttcaaa
cacctacaccattcctagatagctctccctgattcatggcttatggataa
gctctcatctaatgttccagtaccacagcagccagcagctgtgctcccca
ccataattataactctctggagctgcgagcccaaaattaaaggctttctt
ctataacttgcctagctcatggtgtcttgttacagtaatggaaaagtcac
taagagagaatctagtacaaagatggggtattgttgtggccactctggcc
atgctgctttgggatttcagggtggaccataggaaagattttggaacttt
ggactaagaaagtgcttgaatactataagcagggtttaacagactattct
attaagagtttggaagaaagtagtgctaaaagcaatgtagctaggtaaac
ccagctcaagagatttcatagtagaacaatattagcaactgggctagtgg
ccattcttgaaatattttggcaaataatgttgctttcttttgtgtatgtc
aaaagaatatgcctcgggctaaattgaaatttttaattaatttccttgct
ggaggacgttccaagacagcctaatattgattctgtcatatgtgtattag
taatcattcctatgggagtgtgcaaggaaaagaacaagcaaggcaaaaag
aaaaacacaacatggagtttgaagcaaaagaaagaccaccaggaaatgta
gagctgtagtcaaggcttgtgctggaagaggtaagactaaagacagctgg
gttctgaaatgaataagggagagaagacacaccaagtagctttcacatta
aaaatagaagaagactgaggactttctaccctaaacacactacaaggaaa
gtttctgcaatataggggtcagaatccaccaggatcagcaacttgatagg
atggccatgttctgactttgagtcagcaggaatacacagtagatcattga
actcctttgcacgtgaggaacttcgatgtcgcactgac
gaattctcctttctgacttgaattttctgggctgaaatttgtttaggatg
taacttttgttctttttaaaatattttttattaggtattttcctcattta
catttccaatgctatcccaaaattcccccataccctcccccccccactcc
cctacccacccactcccactttttggccctggcattcccctgtactgggg
catataaagtttgcaagtccaatgggcctctctttgcagtgatggccgac
taggccatcttttgatacatatgcagctaaagacaagagctcccgggtac
tggttagttcatattgttgttccacctatagggttgcagttccctttagc
tccttgggtactttctctagctcctccataaggggccatgtgacccatcc
aatagctgactgtgatcatccacttctgtgtttgctaggccccggcatag
tctcacaagagacagctctatctgggtcctttcagcaaaattttgctagt
gtatgcaatggtataacttatgttctaaatattaaatatatctaaataac
gatattgcctgtgaatcttttctggaacaacaactactccccaaaaattt
aaagctcattgattcagagcaatggcttgtagtaaaatgccttcagaggt
atcagctaataaaataccctccatatatggataatatacactgaaaggat
tcaaatttcttgtattgaagcagcaacacatttttttatataatgaaggg
ctattagccattccctgtggccaaagtttccaatgatatcgcttcatgga
ctccttaaattacaagctgactaaaagcaaaccctgtataattatcagat
gtaaaggaataaaaacaatactccaacctataataaatctatatagagta
gggaggcagattgtaatccctctacaagttctataacctcattatctttc
ataggtcttaagtttggacttggtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120579_1121024
seq2: B6Ng01-037D19.g_130_567

seq1  TTTTTAATTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATT  50
      |||||||  |        ||||||||||||||||||  ||||||||||||
seq2  TTTTTAAAAT--------ATTTTTTATTAGGTATTTTCCTCATTTACATT  42

seq1  TCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTG  100
      ||||||||||| |||||| ||||||||| || ||| ||||||||||||| 
seq2  TCCAATGCTATCCCAAAATTCCCCCATACCCTCCCCCCCCCACTCCCCTA  92

seq1  CCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATA  150
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  CCCACCCACTCCCACTTTTTGGCCCTGGCATTCCCCTGTACTGGGGCATA  142

seq1  TAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGG  200
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGATGGCCGACTAGG  192

seq1  CCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGT  250
      ||||||||||||| ||||||||||| || |||||||||| ||||||||||
seq2  CCATCTTTTGATACATATGCAGCTAAAGACAAGAGCTCCCGGGTACTGGT  242

seq1  TAGCTCATAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCCT  300
      ||| |||||  ||||||||||||||||||||| || ||||||||||||||
seq2  TAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGCTCCT  292

seq1  TGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTA  350
      ||| |||||||||||||||||||||  || ||| | ||| ||||||| ||
seq2  TGGGTACTTTCTCTAGCTCCTCCATAAGGGGCCATGTGACCCATCCAATA  342

seq1  GCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTC  400
      ||||||||||| |||||||||||||||||||| |||||||||||||||||
seq2  GCTGACTGTGATCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTC  392

seq1  ACAAGAGACAGCTACATCTGCCTCCTTTCAATAAAATCTTGCTAGT  446
      |||||||||||||  |||||  ||||||||  ||||| ||||||||
seq2  ACAAGAGACAGCTCTATCTGGGTCCTTTCAGCAAAATTTTGCTAGT  438