BAC Information

Click to search

BAC

Clone NameB6Ng01-037P02
ChromosomeY (Build37)
Map Location 926,408 - 927,553
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y
Downstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037P02.bB6Ng01-037P02.g
ACCDH865655DH865656
length972780
definitionDH865655|Mus musculus domesticus DNA, BAC clone: B6Ng01-037P02, 5' end.DH865656|Mus musculus domesticus DNA, BAC clone: B6Ng01-037P02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttctgttttgaattttctttgacagttgtgtctatttcttcta
cagtatcttctacacctgagactctctcttatatctattgtattcttttg
gtaatacatctgcaattcatgatctctttactaggttttctatttccagg
tttgcctccatttgtgttttctttattgtttctatctccacttttaggtc
ttgggttgctttcttcacttcatttccccgtgtaccccgagttttcctgt
atttctgtcagtgagttattgatatcctccttaaaggactctattatatt
catgagataggatttaaaacagattccagatttttttttagtggcttgat
atattcagggcttgctgtagtggacgaggtatattctgatgatgcccatg
tattttggcttcctttgcttatggtcttgagcttgtcttcccatctggat
atgctaggtgtttgttggtctgaatggctatctggagtctgcctcttttg
tccctggtttgcttcaggtcttcagataggcctgtagcctggttatagca
gactatatgtggtgccttccaactgggggaatcttcacagagatagagaa
ggtgatgatctattgtgctagctgcagtagatctcctggggggtcttcag
cctgttgggtctacctacagtggagcagccaggctgttctccaactgctc
tgagtacagctgttccttgactgctgagttcaatgtatactcaactgctt
tctttgagtgcagtaggtcctctaggatgggtctgaatatagtgtcttta
tgggagtagactaactagggtgctgccctatcacagaagaccaggcagaa
gttgtggaaagggacagaagggcagtggtatttaggagggcagaagtttt
ggtgggtgatgtgttccaagtccaccagtcttcaaggagcagcttccaga
ctggggggtgggggagggcatt
gaattcactgctctcctatgtttcttggacctcccaataccaagaacacc
cctcaaggggaattgattgttggaagcctgggaagttattgaagtattca
ttgaagacctctcccttctcactcacaattcattttctattgtttgagta
atttactcttctaaaagccaatgttactggtcttgacaaacacatacatg
ttcagatttctgctccttttgtgtctgtctgaatccaagagttctaacac
tgaacattttttggctctggataatgggatagactgatcgaatatcacag
gtgtggaataaaacctaaggcagtgcaggtgacttggagcagttgtccat
tatttagcacatttaaagtccatctaagctcaagtcaaacttctataagt
caacaagtctgccttaactttgggcacagggtactatcactggagataat
cagaagcagaaaataaagatggttagccatacagctataaaattttttgt
ttggaagtgtttgggacctacaaagaccagatcaattacaaaatcccaac
agccacattcatttaacttgtttttagattctgcacttgaggtttctata
gtttttgggaacaacaacaacaaaagacaacagtctaattttttgtcaaa
tagaactaatacttattcaaatagaacaaatataagagcatcaaatggaa
atgtatgaagataactggcagctgatacatagatggaagcaaggaaaaat
tggctgtacctgctccagtcttaattcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_926408_927553
seq2: B6Ng01-037P02.g_70_849

seq1  GAATTCACTGCTCTCCTATGTTTCTTGGACCTCCCAATACCAAGAACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCTCTCCTATGTTTCTTGGACCTCCCAATACCAAGAACACC  50

seq1  CCTCAAGGGGAATTGATTGTTGGAAGCCTGGGAAGTTATTGAAGTATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGGGGAATTGATTGTTGGAAGCCTGGGAAGTTATTGAAGTATTCA  100

seq1  TTGAAGACCTCTCCCTTCTCACTCACAATTCATTTTCTATTGTTTGAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGACCTCTCCCTTCTCACTCACAATTCATTTTCTATTGTTTGAGTA  150

seq1  ATTTACTCTTCTAAAAGCCAATGTTACTGGTCTTGACAAACACATACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTCTTCTAAAAGCCAATGTTACTGGTCTTGACAAACACATACATG  200

seq1  TTCAGATTTCTGCTCCTTTTGTGTCTGTCTGAATCCAAGAGTTCTAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTTCTGCTCCTTTTGTGTCTGTCTGAATCCAAGAGTTCTAACAC  250

seq1  TGAACATTTTTTGGCTCTGGATAATGGGATAGACTGATCGAATATCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTTTTTGGCTCTGGATAATGGGATAGACTGATCGAATATCACAG  300

seq1  GTGTGGAATAAAACCTAAGGCAGTGCAGGTGACTTGGAGCAGTTGTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAATAAAACCTAAGGCAGTGCAGGTGACTTGGAGCAGTTGTCCAT  350

seq1  TATTTAGCACATTTAAAGTCCATCTAAGCTCAAGTCAAACTTCTATAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGCACATTTAAAGTCCATCTAAGCTCAAGTCAAACTTCTATAAGT  400

seq1  CAACAAGTCTGCCTTAACTTTGGGCACAGGGTACTATCACTGGAGATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGTCTGCCTTAACTTTGGGCACAGGGTACTATCACTGGAGATAAT  450

seq1  CAGAAGCAGAAAATAAAGATGGTTAGCCATACAGCTATAAAATTTTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCAGAAAATAAAGATGGTTAGCCATACAGCTATAAAATTTTTTGT  500

seq1  TTGGAAGTGTTTGGGACCTACAAAGACCAGATCAATTACAAAATCCCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGTGTTTGGGACCTACAAAGACCAGATCAATTACAAAATCCCAAC  550

seq1  AGCCACATTCATTTAACTTGTTTTTAGATTCTGCACTTGAGGTTTCTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACATTCATTTAACTTGTTTTTAGATTCTGCACTTGAGGTTTCTATA  600

seq1  GTTTTTGGGAACAACAACAACAAAAGACAACAGTCTAA-AATCTGTCAAA  649
      ||||||||||||||||||||||||||||||||||||||   | |||||||
seq2  GTTTTTGGGAACAACAACAACAAAAGACAACAGTCTAATTTTTTGTCAAA  650

seq1  TAGAACTAATACTTATTCAAATAGAACAAATATAAGAGCATCAAATGGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTAATACTTATTCAAATAGAACAAATATAAGAGCATCAAATGGAA  700

seq1  ATGTATGAAGATAACTGGCAGCTGATACATAGAT-GAAGCAAGG-AAAAT  747
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  ATGTATGAAGATAACTGGCAGCTGATACATAGATGGAAGCAAGGAAAAAT  750

seq1  TGGCTGTACCTGCTCCAGTCTTAATATCAT-GGTGCTAACTGGTACAGGT  796
      ||||||||||||||||||||||||| ||||                    
seq2  TGGCTGTACCTGCTCCAGTCTTAAT-TCATA-------------------  780

seq1  GAGATGAGAGGCACTTCTCAGGTTCTCTGTGGTATGGTGTAGGGATGTGT  846
                                                        
seq2  --------------------------------------------------  780

seq1  GGCCAGGAGCTGCTGTGCCTCTGAGGAGCTGTTCCTAGAGAAGCCAGTGG  896
                                                        
seq2  --------------------------------------------------  780

seq1  CATAGACACAGGTGTCATTATCCAGATTTCTTTCAGGGGCAAATGTGCTT  946
                                                        
seq2  --------------------------------------------------  780

seq1  TTATTGAGCTGCAGACAGGGCAAGCAGCAAAGATCAGAAATGGTACATTG  996
                                                        
seq2  --------------------------------------------------  780

seq1  AACTTTGTAACAAGAAAGTGACACCAGGAAGCTATTGGGTGAGTGTTGGT  1046
                                                        
seq2  --------------------------------------------------  780

seq1  GTTTTAAAGACCTGGAGATAAAATGCTCTTGATCTGTGGCCGTCAGTGAC  1096
                                                        
seq2  --------------------------------------------------  780

seq1  CACTAGGAATACACTTATTCTAGGAGTGCTTGTAAGCTGTTTAAGTCATA  1146
                                                        
seq2  --------------------------------------------------  780