BAC Information

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BAC

Clone NameB6Ng01-039B06
ChromosomeY (Build37)
Map Location 1,120,568 - 1,121,038
singlet/doubletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039B06.bB6Ng01-039B06.g
ACCDH866452DH866453
length9381,200
definitionDH866452|Mus musculus domesticus DNA, BAC clone: B6Ng01-039B06, 5' end.DH866453|Mus musculus domesticus DNA, BAC clone: B6Ng01-039B06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccttccactaactctttttttttttttttttttttttaactttt
ttttttccattttttattaggtatttaactcatttacatttccaatgcta
taccaaaagtcccccttatccacccacccccactcccctgcccacccact
ccccctttttggccctggaattcccctgtactggggcatataaagtttgc
aagtccaatgggcctctctttccagtgatggccgactaggccatcttttg
atatatatgcagctagagtcaagagctccggggtactggttagctcataa
tgttgttccacctatagggttgcagatccctttagctccttggctacttt
ctctagctcctccattgggagccctatgatccatccattagctgactgtg
agcatccacttctgtgtttgctgggccccggcatagtctcacaagaaaca
gctacatctgcgtcctttcaataaaatcttgctagtgtatgcaatggtgt
cagcgtttggatgctgattatggggtggatccctggctatggcagtctct
acatggtccatcctttcatctcagctccaaactccgtctctgtaactcct
tccatgggtgttttgttcccaaatctaaggaggggcatggtgtccacact
tcagtcttcattctccttgagtttcatgtgtttagcaaattatatcttat
atcttgggtatcctaggtttggggctaatatccacttatcagtgaataca
tattgtgtgagtttctttgtgaatgtgttacctcactcaggatgatgccc
tccaggtccatccatttggctaggaatttcataaattcattctttttaat
agctgagtagtactccattgtgtagatgtaccacattttctgtatccatt
cctctgttgaggggcatctgggttctttccagctttct
gaattccttgcttcctatcagatcaccacaaattaaagcaggacttcaac
aacatgagaacaacagaaagcttacaaatttatggaaaatagacaacttt
ctattgaatgaaaaataagccaagatagaaataaagaaattaaagactgt
ctagaattcaatgaaaaagaatatataacatacctcaaagtgtgggatac
aataaaagttatgctaagtggtaagatcacagcactaagggtgtacacaa
gaaaaaaaaaacaaactccagagttctcatactagcaacttaacagcaca
cctaaaaactctagagaaaaagaagtaaatacacccaagaggagtcgata
gcaggaaatactcaatctcatgactgaaatcaatagattagaaacaaaga
gaacaatataatcaatgaaacaaagagttggtcctttgagaaaaaaatca
acaagatcaataaatccttatccaaagtaactaaaacatggagagagaat
atccaaattagcaatgaaatgaaaagggaggcataataataaacacaaag
gaaatccagagatgctccaccaaattggaaaatctaaaagaccaatgagt
atggccctaataaagatatccaaggcaatttcatataatctgaaaatggc
tttgggggcctggctccaggccttgcagcaatatttacaagatgttttag
acaagagcagcttagagtcaccaggttacagaaaaaactgtggaattaaa
tcatcctatatactatacgaatgtgttaacatcagaatggaagcccataa
atgttttgagttggggacataggtttgcttatattttcacaggaagtgaa
aaactgtgggtaacaagaaactgataaagattagaattgagcaggagaga
tctgaaactttggtcgctggtccaaatgaagagacaaaaagcagcagcag
gacagattccattttgttcttaaactctatttaagctgctatccttggga
aatctgggaaaggctgctgtctctgtccttggagtgatatgggcctcaac
cttgagtcctgggaagaggacaccacacattccagcagtgaaaatagcat
aacagcgggtggcagttgcaacacagggaaaaatggttccaataacagat
gtatacttcaagcaagagtccctttctgagtgtccctcaggcgtggcgga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120568_1121038
seq2: B6Ng01-039B06.b_72_544

seq1  TTTTTTTTTTTTTTTTAA--TTTTTTTTTCCATTTTTTATTAGGTATTTA  48
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTAACTTTTTTTTTTCCATTTTTTATTAGGTATTTA  50

seq1  ACTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCAC  98
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCTTATCCACCCAC  100

seq1  CCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCT  148
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGAATTCCCCT  150

seq1  GTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTG  200

seq1  ATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCT  250

seq1  CCGGGGTACTGGTTAGCTCATAACGTTGTTCCACCTATAGGGTTGGAGAT  298
      ||||||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  CCGGGGTACTGGTTAGCTCATAATGTTGTTCCACCTATAGGGTTGCAGAT  300

seq1  CCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTAT  350

seq1  GATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCC  400

seq1  CCGGCATAGTCTCACAAGAGACAGCTACATCTGCCTCCTTTCAATAAAAT  448
      ||||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  CCGGCATAGTCTCACAAGAAACAGCTACATCTGCGTCCTTTCAATAAAAT  450

seq1  CTTGCTAGTGTATGCAATGGTGT  471
      |||||||||||||||||||||||
seq2  CTTGCTAGTGTATGCAATGGTGT  473