BAC Information

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BAC

Clone NameB6Ng01-040I20
ChromosomeY (Build37)9 (Build37)
Map Location 2,652,635 - 2,652,703119,910,465 - 119,911,321
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
Downstream geneLOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040I20.bB6Ng01-040I20.g
ACCDH867477DH867478
length1,000857
definitionDH867477|Mus musculus domesticus DNA, BAC clone: B6Ng01-040I20, 5' end.DH867478|Mus musculus domesticus DNA, BAC clone: B6Ng01-040I20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(2,652,635 - 2,652,703)(119,910,465 - 119,911,321)
sequence
gaattctcctctgaggaaacagactgggaggaagaagcagcccattacca
gccagctaattggtcaagaaaaaagccaaaagcggctggcgaaagccagc
gtactgttcaacctcccggcagtcggtttcaaggtccgccctatgctctt
aatagcgttctcacgcgaccggccaggaaagacgcaacaaaccaaaatct
tctgcggcaaaactttattgcttacatctttgggagccaggagggcaagc
gcccagcgcccagccccaaaaacgaaagccccttcaataatgaaaccgaa
accccttccctatttaggagagttatatttcgcctaggacgcatcactcc
ctgattggctgcagcccatggccgaggtgacgttcacgggaaaggtagag
tacaagtagtcataaaatacccttggcacatgcgcagattatttgtttac
cacttagaacacaggatgtcagcgccatcttgtgacggcgaatgtggggg
cggctcccaacatctccccctttccttttaataagagcaaataggccacc
caactaatgagagtggagatagaggtcaaatccccagtgtgtaggtaaag
gagccatatacaggattagctcttaggctcacaggcttttacccagagca
accctgacctgctcccgtgtcgtttttcctgggggaagggaactaggaca
ctgaaccttcatgaaagatgacgtgtctccctagaataggctcatatatg
ccgcagagcctttctactgcagtgcttagccgtgcaactctctcgggctg
ctgaagcacactcactctatcccgtgcaatgagactagcctcgtgagatg
taagagctgagtggccagcgacctattgcctaagcatagatatatcacgg
gaagcttcatgttctagtcctgcaagcgcctggaaaataaccaccttgtc
tctcctagtttgggcctaagcttacagaccaatcaaagaagcaacactaa

gaattcccagaaggttccggatgtgaagtcacgggcgtgaggtcatcgag
agcggttccaggaatctgaaacttgtgggcgagaaaggaaaactcagaag
aaggaaagagggagtattgggggtgggagccagctgtctgagcccaggct
tgtccgctgcccgaacttggctcctcaaaccccagaaaagatcacgcgtc
accctgccacttatgagaaaggccagttgaatgaagaaagcggtactcat
ccgtatgagccaggcatgagctaaaagtccgagacgagtaacacaaaagg
agaggggctgcccgcggggttgaggaataacttgaaaatatgagcatgtc
ctttgacctaacaactgtacgtgcaagaatttgtccttaagcacacaaca
gaaggataaatgctgaggtggtttggggccagagattgtttaaaatattg
aagacttagataatcccactgtaaggagctaattttaaaatacggcatgg
gaaattagcactccatatgttgtgtttgcaagacaactggcttaccggtt
ttcttctgcgtatttgtttgttttgaagacagggtctcatagccatgccg
acctgaaacactgtacatatatatagcccaggctggctttgaactctcca
ccctcctgcctctgcttcctgagtggattacttgccagatatctaagata
ctttatagtgaagcccaagaatgccctgccaacattttcctcatcctgtg
ctggtctcgtttatttcttcactattttaacagtgtaaggacggagttcg
tagtgtatgctgggggtataagtatcaagttatatcccactgagtgtttg
gtttggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_2652635_2652703
seq2: B6Ng01-040I20.b_462_531 (reverse)

seq1  ACAAGATGGCGCTGATATCCGGTGTTCTAACTGGTAAACAAATAGTCTGC  50
      ||||||||||||||| |||| ||||||||| ||||||||||||| |||||
seq2  ACAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGC  50

seq1  GCATGTG-CTGGGGTATTTT  69
      ||||||| |  |||||||||
seq2  GCATGTGCCAAGGGTATTTT  70

seq1: chr9_119910465_119911321
seq2: B6Ng01-040I20.g_69_925 (reverse)

seq1  ACCAAACCAAACACTACAGTGGGATATAACTTGATACTTATACCCCCAGC  50
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACCAAACCAAACACT-CAGTGGGATATAACTTGATACTTATACCCCCAGC  49

seq1  ATACACTACGAACTCCGTCCTTTACACTGTT-AAATAGTGAAGAAATAAA  99
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  ATACACTACGAACTCCGTCC-TTACACTGTTAAAATAGTGAAGAAATAAA  98

seq1  CGAGACCAGCACAGGATGAGG-AAATGTTGGCAGGGCATTCTTGGGCTTC  148
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CGAGACCAGCACAGGATGAGGAAAATGTTGGCAGGGCATTCTTGGGCTTC  148

seq1  ACTATAAAGTATCTTAGATATCTGGCAAGTAATCCACTCAGGAAGCAGAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAAAGTATCTTAGATATCTGGCAAGTAATCCACTCAGGAAGCAGAG  198

seq1  GCAGGAGGGTGGAGAGTTCAAAGCCAGCCTGGGCTATATATATGTACAGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGGGTGGAGAGTTCAAAGCCAGCCTGGGCTATATATATGTACAGT  248

seq1  GTTTCAGGTCGGCATGGCTATGAGACCCTGTCTTCAAAACAAACAAATAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGGTCGGCATGGCTATGAGACCCTGTCTTCAAAACAAACAAATAC  298

seq1  GCAGAAGAAAACCGGTAAGCCAGTTGTCTTGCAAACACAACATATGGAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGAAAACCGGTAAGCCAGTTGTCTTGCAAACACAACATATGGAGT  348

seq1  GCTAATTTCCCATGCCGTATTTTAAAATTAGCTCCTTACAGTGGGATTAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTTCCCATGCCGTATTTTAAAATTAGCTCCTTACAGTGGGATTAT  398

seq1  CTAAGTCTTCAATATTTTAAACAATCTCTGGCCCCAAACCACCTCAGCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTCTTCAATATTTTAAACAATCTCTGGCCCCAAACCACCTCAGCAT  448

seq1  TTATCCTTCTGTTGTGTGCTTAAGGACAAATTCTTGCACGTACAGTTGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTTCTGTTGTGTGCTTAAGGACAAATTCTTGCACGTACAGTTGTT  498

seq1  AGGTCAAAGGACATGCTCATATTTTCAAGTTATTCCTCAACCCCGCGGGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAAGGACATGCTCATATTTTCAAGTTATTCCTCAACCCCGCGGGC  548

seq1  AGCCCCTCTCCTTTTGTGTTACTCGTCTCGGACTTTTAGCTCATGCCTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTCTCCTTTTGTGTTACTCGTCTCGGACTTTTAGCTCATGCCTGG  598

seq1  CTCATACGGATGAGTACCGCTTTCTTCATTCAACTGGCCTTTCTCATAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACGGATGAGTACCGCTTTCTTCATTCAACTGGCCTTTCTCATAAG  648

seq1  TGGCAGGGTGACGCGTGATCTTTTCTGGGGTTTGAGGAGCCAAGTTCGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGGTGACGCGTGATCTTTTCTGGGGTTTGAGGAGCCAAGTTCGGG  698

seq1  CAGCGGACAAGCCTGGGCTCAGACAGCTGGCTCCCACCCCCAATACTCCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGACAAGCCTGGGCTCAGACAGCTGGCTCCCACCCCCAATACTCCC  748

seq1  TCTTTCCTTCTTCTGAGTTTTCCTTTCTCGCCCACAAGTTTCAGATTCCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTTCTTCTGAGTTTTCCTTTCTCGCCCACAAGTTTCAGATTCCT  798

seq1  GGAACCGCTCTCGATGACCTCACGCCCGTGACTTCACATCCGGAACCTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCGCTCTCGATGACCTCACGCCCGTGACTTCACATCCGGAACCTTC  848

seq1  TGGGAATTC  857
      |||||||||
seq2  TGGGAATTC  857