BAC Information

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BAC

Clone NameB6Ng01-041A06
ChromosomeY (Build37)13 (Build37)
Map Location 1,870,346 - 1,870,41521,080,196 - 21,081,058
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041A06.bB6Ng01-041A06.g
ACCDH867802DH867803
length614865
definitionDH867802|Mus musculus domesticus DNA, BAC clone: B6Ng01-041A06, 5' end.DH867803|Mus musculus domesticus DNA, BAC clone: B6Ng01-041A06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,415)(21,080,196 - 21,081,058)
sequence
gaattcccctatactgaggcgtagaaccttcacaggaccaagagcctctc
ctcccattgatgaccggcgaggccatcctctgctacatatgcagctagag
ccatgagtcccattatgtgttttctttgattggtggtttagtcccaggga
gctctggggttactggttagttcatattgttgttcctcctatagggctgc
aaaccccttcagctccttggatactttctctagctccttcattggggacc
ctgtgctctgtctaatggatgattgtgagcatccacttctgtattagtca
ggcactggcagagcctcttaggagacagctatatcaggctcctgtcagca
agctcttattggcatctgcaatcgtgtctgcgtttggtggttatttatgg
gatggatcccccggtggggcagtctctggatggtccttccttcagtctct
gctctgaactttgtctctgtaattccttccatgggtattttgtttccccc
ttctaagaaggatcaaagtgtctacactttggttttccttctccttgagt
ttcatgtgttttgcaaattgtatcttgggtattctgagtctctgggctaa
tatccacttatcag
gaattcatttccacacgtaaggactccttatttttagacctcccatgatc
tctattctggaacaaaataagttttgtaccttaagctaactgagcttctg
gtattgtatttttgccaaaataattgcataacctgagtttagtcatgagg
aacattaagacaaacccaaactgaaagccacttaagaactggccagtacc
atcaaaatatgtcaaggtcataaggacagggactaagcaatctttccaga
ttaaggcagaccaaagaggcctgagatccaagtagagtaaattagaccta
ggcaagaaagtggtcatcagggacatttaacttaggtatgcagattagac
aacagtactgttcacatgttagttttgtagttttgatcattgtaattatt
gcagatgtatatagttagaaaaatctaagtaaaggatgtgtatatatctt
tgttctattttttagaactttagcaatcatttcaaaatgaaaatacttaa
aatactttcaaaagctacaacagcactggagggaatttctaaggtcacct
gtgtcacactgaaatagggccccaggaatcatgtggggagtaccactatt
ggattgaatatttgatcataacccaaaaccttgaaaggagatggaaaagg
ttattttatagcagaacatctagggcatttctgtttggggagtctgaaat
aatgtggtcaaagcactagaaaaagtcttttagtatccaagtcttaaata
ctcactctgaaaacaaaatgatataaaagcatcagtgactacagctcaaa
attgttttttttttaagaatccaatatatctttgaaaacacagtatttat
attataggaactttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870415
seq2: B6Ng01-041A06.b_208_277 (reverse)

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||| |||||||||| ||||| | |||| ||||||||| |||
seq2  CTAGAGAAAGTATCCAAGGAGCTGAAGGGGTTTGCAGCCCTATAGGAGGA  50

seq1  ACAACATTATGAACTAACCA  70
      |||||| |||||||||||||
seq2  ACAACAATATGAACTAACCA  70

seq1: chr13_21080196_21081058
seq2: B6Ng01-041A06.g_72_936

seq1  GAATTCATTTCCACACGTAAGGACTCCTTATTTTTAGACCTCCCATGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCACACGTAAGGACTCCTTATTTTTAGACCTCCCATGATC  50

seq1  TCTATTCTGGAACAAAATAAGTTTTGTACCTTAAGCTAACTGAGCTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCTGGAACAAAATAAGTTTTGTACCTTAAGCTAACTGAGCTTCTG  100

seq1  GTATTGTATTTTTGCCAAAATAATTGCATAACCTGAGTTTAGTCATGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTATTTTTGCCAAAATAATTGCATAACCTGAGTTTAGTCATGAGG  150

seq1  AACATTAAGACAAACCCAAACTGAAAGCCACTTAAGAACTGGCCAGTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAAGACAAACCCAAACTGAAAGCCACTTAAGAACTGGCCAGTACC  200

seq1  ATCAAAATATGTCAAGGTCATAAGGACAGGGACTAAGCAATCTTTCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATATGTCAAGGTCATAAGGACAGGGACTAAGCAATCTTTCCAGA  250

seq1  TTAAGGCAGACCAAAGAGGCCTGAGATCCAAGTAGAGTAAATTAGACCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCAGACCAAAGAGGCCTGAGATCCAAGTAGAGTAAATTAGACCTA  300

seq1  GGCAAGAAAGTGGTCATCAGGGACATTTAACTTAGGTATGCAGATTAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGAAAGTGGTCATCAGGGACATTTAACTTAGGTATGCAGATTAGAC  350

seq1  AACAGTACTGTTCACATGTTAGTTTTGTAGTTTTGATCATTGTAATTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTACTGTTCACATGTTAGTTTTGTAGTTTTGATCATTGTAATTATT  400

seq1  GCAGATGTATATAGTTAGAAAAATCTAAGTAAAGGATGTGTATATATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGTATATAGTTAGAAAAATCTAAGTAAAGGATGTGTATATATCTT  450

seq1  TGTTCTATTTTTTAGAACTTTAGCAATCATTTCAAAATGAAAATACTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTATTTTTTAGAACTTTAGCAATCATTTCAAAATGAAAATACTTAA  500

seq1  AATACTTTCAAAAGCTACAACAGCACTGGAGGGAATTTCTAAGGTCACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTTCAAAAGCTACAACAGCACTGGAGGGAATTTCTAAGGTCACCT  550

seq1  GTGTCACACTGAAATAGGGCCCCAGGAATCATGTGGGGAGTACCACTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACACTGAAATAGGGCCCCAGGAATCATGTGGGGAGTACCACTATT  600

seq1  GGATTGAATATTTGATCATAACCCAAAACCTTGAAAGGAGATGGAAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGAATATTTGATCATAACCCAAAACCTTGAAAGGAGATGGAAAAGG  650

seq1  TTA-TTTATAGCAGAACATCTAGGGCATTTCTGTTTGGGGAGTCTGAAAT  699
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATAGCAGAACATCTAGGGCATTTCTGTTTGGGGAGTCTGAAAT  700

seq1  AATGTGGTCAAAGCACTAGAAAAAGTC-TTTAGTATCCAAGTCTTAAATA  748
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AATGTGGTCAAAGCACTAGAAAAAGTCTTTTAGTATCCAAGTCTTAAATA  750

seq1  CTCACTCTGAAAACAAAATGATATAAAAGCATCAGTGACTACAGCTCAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTGAAAACAAAATGATATAAAAGCATCAGTGACTACAGCTCAAA  800

seq1  ATTG-TTTTTTTATAAGAATCCAATATATC-TTGAAAACACAGTATTTAA  846
      |||| ||||||| ||||||||||||||||| |||||||||||||||||| 
seq2  ATTGTTTTTTTTTTAAGAATCCAATATATCTTTGAAAACACAGTATTTA-  849

seq1  TAATTATAGGAACTTTT  863
        |||||||||||||||
seq2  -TATTATAGGAACTTTT  865