BAC Information

Click to search

BAC

Clone NameB6Ng01-041B10
ChromosomeY (Build37)10 (Build37)
Map Location 6,069 - 6,36414,055,916 - 14,056,199
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041B10.bB6Ng01-041B10.g
ACCDH867853DH867854
length477268
definitionDH867853|Mus musculus domesticus DNA, BAC clone: B6Ng01-041B10, 5' end.DH867854|Mus musculus domesticus DNA, BAC clone: B6Ng01-041B10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,069 - 6,364)(14,055,916 - 14,056,199)
sequence
gaattcaatattcatcatctaatatcacattctatcctatccttgttaaa
aaaaaaaaaagctttcactgttcacccgtgagcagaccaaaagagacatt
ggcactataagttcttttctcacttaagcacaagtcctccagtacttaac
atctgacattctcagctagtccttaatatctgccccacccgggggtccat
cccatagtcagccaacaaacgcagacactattgcatatgccagcaagatt
ttgctgaaaggaccctgatatagctgtctcctgtgaggctatgccagaac
ctggcaaatacagaagtggatgctcacagtcatatataggatggaataca
gggcccccaatgtaggagctagagaaagtacccaagagctgaaggggtct
gcaaccctattataggtggaacaacaatttgaactaaccagtacccccag
agctcgtgtctctagctgcatatgtag
tccgttcttccctggactttgaaaagggagaatttagtcagtagagtgag
agaaatgagggcatagttggaaggggaacataaggacactttaaggaggc
aatacggcttttcttccttgatggtttgctagctctttagtaagagatta
gaaaataattttcctttaataattccttttgattgatggtaaatgtagag
tatatatatatatatatatatatatatatatatatatatatatatatata
tatttatatatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_6069_6364
seq2: B6Ng01-041B10.b_211_508

seq1  CTGCCCCACCCGGGGATCCATCCCATAAACAGCCACCAAACCCAGACACT  50
      ||||||||||||||| |||||||||||  |||||| ||||| ||||||||
seq2  CTGCCCCACCCGGGGGTCCATCCCATAGTCAGCCAACAAACGCAGACACT  50

seq1  ATTGCATATGCCAGCAAGATTTTGCTGACAGGACCCTGATATAGCTCTCT  100
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  ATTGCATATGCCAGCAAGATTTTGCTGAAAGGACCCTGATATAGCTGTCT  100

seq1  CTTGTGAGGCAATGCCAGTGCCTGACAAATACAGAAGTGAATGCTCACAG  150
      | |||||||| |||||||  |||| |||||||||||||| ||||||||||
seq2  CCTGTGAGGCTATGCCAGAACCTGGCAAATACAGAAGTGGATGCTCACAG  150

seq1  TCATCTATTGGATGGAACACATGCCCTCCAATGAAGGAGCTAGAGAAAAT  200
      |||| ||| |||||||| ||| | || |||||| |||||||||||||| |
seq2  TCATATATAGGATGGAATACAGGGCCCCCAATGTAGGAGCTAGAGAAAGT  200

seq1  ACCCAAGGAGCTAAAGGGGTCTGCAACCC---TATAGGAGGAACAACAGT  247
      |||||| ||||| ||||||||||||||||   |||||| ||||||||| |
seq2  ACCCAA-GAGCTGAAGGGGTCTGCAACCCTATTATAGGTGGAACAACAAT  249

seq1  ATGAACTAACCAGTACCCCCAGAGCTTGTGTCTCTAGTTGCATATGTAG  296
       ||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  TTGAACTAACCAGTACCCCCAGAGCTCGTGTCTCTAGCTGCATATGTAG  298

seq1: chr10_14055916_14056199
seq2: B6Ng01-041B10.g_71_344

seq1  GAATTCTCCGTTCTTCCCTGGACTTTGAAAAGGGAGAATTTAGTCAGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCGTTCTTCCCTGGACTTTGAAAAGGGAGAATTTAGTCAGTAG  50

seq1  AGTGAGAGAAATGAGGGCATAGTTGGAAGGGGAACATAAGGACACTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAGAAATGAGGGCATAGTTGGAAGGGGAACATAAGGACACTTTAA  100

seq1  GGAGGCAATACGGCTTTTCTTCCTTGATGGTTTGCTAGCTCTTTAGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAATACGGCTTTTCTTCCTTGATGGTTTGCTAGCTCTTTAGTAAG  150

seq1  AGATTAGAAAATAATTTTCCTTTAATAATTCCTTTTGATTGATGGTAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGAAAATAATTTTCCTTTAATAATTCCTTTTGATTGATGGTAAAT  200

seq1  GTAGAGTATATATATATATATATATATATATATATATATATATATATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  GTAGAGTATATATATATATATATATATATATATATATATATATATATA--  248

seq1  TGGAATATATATAACTGGAATATATATATGTATA  284
          |||||||||  |   |||||||||| ||  
seq2  ---TATATATATATTT---ATATATATATATA--  274