BAC Information

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BAC

Clone NameB6Ng01-043E15
Chromosome1 (Build37)Y (Build37)
Map Location 124,984,006 - 124,985,185573,570 - 573,635
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666971
Downstream geneLOC666983, Dpp10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043E15.bB6Ng01-043E15.g
ACCDH869398DH869399
length1,1651,008
definitionDH869398|Mus musculus domesticus DNA, BAC clone: B6Ng01-043E15, 5' end.DH869399|Mus musculus domesticus DNA, BAC clone: B6Ng01-043E15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(124,984,006 - 124,985,185)(573,570 - 573,635)
sequence
gaattcatcacaagcaaggagaaacaatattcaaagtcaaacaaggtgca
cagcaaggaagttggaaatttagatacaaccattttatttatgtattatt
tatttatgtaaaagagttaacatttttaaaattgtgtatatgtgtgtgtg
tctgtgtgggtatgcgcaggtatgtgaatgcacaaagagttcagaagagc
acgtgtcatcttccaaagctggagtgtcaggcagttgttagtaggcagta
ctgagaactgagctctggtcttctggaagaggagcaggtgttcctaaccc
ctgaaatatctcatctttccagccacttctgtccccaccccccacccccc
caggattaaatcacaaactgtcaagataatcaaaatcaccatgaaggcat
gagaaatgatgcaggagtgctggctttttttgttagaaacaatgaacgta
ggaaacaaaggaaaaactggcttcagagttatgagaaggaaagagttttc
aacccagaatagaatactgtgtcaatcttcagtaagggagaaagcagaat
aaaattattctgtgtcatgtgagacttatagagttacctttcatgcactt
ggggaccccccttaaggatgtgtcagaaagactagagacagggacaatta
aaaggaggatgtgaatttgtgaagccaggaaaggcagcagagaagcagac
ctggagagttcagatggaagcagaagaaagcctgtcaaagaagcctgtct
cctgaaggaaagtggattcacagaggggagatcttgaaagttttaacatg
tggaagtcaaagaaccctgcttgatgtggcagaagtgagcagacctgaag
cccaggttaaaaacaagagaaacaaaatgaaaagcagtaacacaggagca
aatcaaatcccttgcaacttatcaatcacaaaatgagcctttaggagtat
ggattccgcttcttcaaagcgcactatatataattttgacattaaaaaaa
taaagatttgtttatgattgttcatatgtatcctgttatgtggatacatt
cacatgagtagcgtacagcaagccagaagggtggttattccattgaatct
tggaattgtagctgcctgactgtatgctggactcactggcaatctctgca
agaaagcaagtagtc
gaattctctgtttagctctgtagccaattttaattgtattatttagttta
atggagtttaactgcttgagttctttatatattttgggtgttagccctct
atctggcatagggttagtaaagaccttttcctaatttgtataggggactg
tatagggtataggggacttttgggaaaacatttgaaatgtaaatgaagaa
agtatctaataaaaaattttaaaaaatatggaaatccatcaatatattcc
actatataaacaaactcaaagacaaaaaccacatcatcatctcattagat
gctgagaaagcatttgacaaaatccaaaatgcctttgtgatgaatgtctt
ggaaagatcaggaattcaaggcccatacctaaacataataaagcaatcga
cagcaaaccagtagccaacatcaaagtaaatggaaagaagctggaagcaa
tcccactaaaatcagggactagacaaacctgcccactccctccctaccta
ttcaacttagcacttgaagtcctacttagagcaattcgacaacaaaagga
gatcaaggggataaaaattggaaaggaggaagtcaaaataccactatttg
cagatgatatgatagtatatataagtgaccttaagaactccaccagagaa
ctcctaaacctgataaacagcttcagtgcagttagctggatataaaatta
actcaaacaaatcagtggcctttctgtacacaaaagataaacaggctgag
aaagaaattagggaaacaacacccttcacaatagtcacaagaaatataaa
ataccttggtgtgactctaactaaaaaactgaaagatctgtatgataaga
acttcaagtctctgaagaagaaatcaaagatttaagagatggaaagatct
cccatgctcatagattggcagattatatagtcaaatggctatcccccgaa
agcatctacagattcatgcatccccatcaaattcactcaattcttcacta
gatagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_124984006_124985185
seq2: B6Ng01-043E15.b_46_1210

seq1  GAATTCATCACAAGCAAGGAGAAACAATATTCAAAGTCAAACAAGGTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACAAGCAAGGAGAAACAATATTCAAAGTCAAACAAGGTGCA  50

seq1  CAGCAAGGAAGTTGGAAATTTAGATACAACCATTTTATTTATGTATTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGGAAGTTGGAAATTTAGATACAACCATTTTATTTATGTATTATT  100

seq1  TATTTATGTAAAAGAGTTAACATTTTTAAAATTGTGTATATGTGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGTAAAAGAGTTAACATTTTTAAAATTGTGTATATGTGTGTGTG  150

seq1  TCTGTGTGGGTATGCGCAGGTATGTGAATGCACAAAGAGTTCAGAAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGGGTATGCGCAGGTATGTGAATGCACAAAGAGTTCAGAAGAGC  200

seq1  ACGTGTCATCTTCCAAAGCTGGAGTGTCAGGCAGTTGTTAGTAGGCAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTCATCTTCCAAAGCTGGAGTGTCAGGCAGTTGTTAGTAGGCAGTA  250

seq1  CTGAGAACTGAGCTCTGGTCTTCTGGAAGAGGAGCAGGTGTTCCTAACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACTGAGCTCTGGTCTTCTGGAAGAGGAGCAGGTGTTCCTAACCC  300

seq1  CTGAAATATCTCATCTTTCCAGCCACTTCTGTCCCCACCCCCCACCCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATATCTCATCTTTCCAGCCACTTCTGTCCCCACCCCCCACCCCCC  350

seq1  CAGGATTAAATCACAAACTGTCAAGATAATCAAAATCACCATGAAGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTAAATCACAAACTGTCAAGATAATCAAAATCACCATGAAGGCAT  400

seq1  GAGAAATGATGCAGGAGTGCTGGCTTTTTTTGTTAGAAACAATGAACGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGATGCAGGAGTGCTGGCTTTTTTTGTTAGAAACAATGAACGTA  450

seq1  GGAAACAAAGGAAAAACTGGCTTCAGAGTTATGAGAAGGAAAGAGTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAAAGGAAAAACTGGCTTCAGAGTTATGAGAAGGAAAGAGTTTTC  500

seq1  AACCCAGAATAGAATACTGTGTCAATCTTCAGTAAGGGAGAAAGCAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGAATAGAATACTGTGTCAATCTTCAGTAAGGGAGAAAGCAGAAT  550

seq1  AAAATTATTCTGTGTCATGTGAGACTTATAGAGTTACCTTTCATGCACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTCTGTGTCATGTGAGACTTATAGAGTTACCTTTCATGCACTT  600

seq1  GGGGACCCCCCTTAAGGATGTGTCAGAAAGACTAGAGACAGGGACAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACCCCCCTTAAGGATGTGTCAGAAAGACTAGAGACAGGGACAATTA  650

seq1  AAAGGAGGATGTGAATTTGTGAAGCCAGGAAAGGCAGCAGAGAAGCAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGGATGTGAATTTGTGAAGCCAGGAAAGGCAGCAGAGAAGCAGAC  700

seq1  CTGGAGAGTTCAGATGGAAGCAGAAGAAAGCCTGTCAAAGAAGCCTGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGTTCAGATGGAAGCAGAAGAAAGCCTGTCAAAGAAGCCTGTCT  750

seq1  CCTGAAGGAAAGTGGATTCACAGAGGGGAGATCTTGAAAGTTTTAACATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGGAAAGTGGATTCACAGAGGGGAGATCTTGAAAGTTTTAACATG  800

seq1  TGGAAGTCAAAGAACCCTGCTTGATGTGGCAGAAGTGAGCAGACCTGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTCAAAGAACCCTGCTTGATGTGGCAGAAGTGAGCAGACCTGAAG  850

seq1  CCCAGGTTAAAAACAAGAGAAACAAAAATGAAAAGCAGTAACAACAGGAG  900
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  CCCAGGTTAAAAACAAGAGAAAC-AAAATGAAAAGCAGTAAC-ACAGGAG  898

seq1  CAAAATCAAATCCCTTGCAACTTATCAAATCACAAAAATGAGCCTTTAGG  950
      | |||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  C-AAATCAAATCCCTTGCAACTTATC-AATCAC-AAAATGAGCCTTTAGG  945

seq1  AGTATGGATTCCGCTTCTTCAAAGGCGCACTATATATAATTTTTGACATT  1000
      ||||||||||||||||||||||| ||||||||||||||| ||||||||||
seq2  AGTATGGATTCCGCTTCTTCAAA-GCGCACTATATATAA-TTTTGACATT  993

seq1  AAAAAAATAAAGATTTGTTTTATGATTGTTCATATGTATCTTGTTATGTG  1050
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  AAAAAAATAAAGATTTG-TTTATGATTGTTCATATGTATCCTGTTATGTG  1042

seq1  GATACATTCACATGAGTAGCGTACCAGCAAAGCCCAGAAAAGGGT-GTTA  1099
      ||||||||||||||||||||||| |||| |||||   | |||||| ||||
seq2  GATACATTCACATGAGTAGCGTA-CAGC-AAGCC---AGAAGGGTGGTTA  1087

seq1  GTCCCATGAATC-TGGAGTTGTAGCTGCCTGACATGTATGCTGGAACTCA  1148
       |||  |||||| |||| ||||||||||||||| |||||||||| |||| 
seq2  TTCCATTGAATCTTGGAATTGTAGCTGCCTGAC-TGTATGCTGG-ACTC-  1134

seq1  ACTGGCATCTTCTGCAAAGAAAGCAAGTAGTC  1180
      |||||||   ||||| ||||||||||||||||
seq2  ACTGGCAATCTCTGC-AAGAAAGCAAGTAGTC  1165

seq1: chrY_573570_573635
seq2: B6Ng01-043E15.g_222_288

seq1  TATAGGGGACTTTTGGGATAGCATTTGAAATGTAAATGAAGAAAATAACT  50
      |||||||||||||||||| | ||||||||||||||||||||||| || ||
seq2  TATAGGGGACTTTTGGGAAAACATTTGAAATGTAAATGAAGAAAGTATCT  50

seq1  AATAAAAAATTTAAAA-  66
      |||||||||||| ||| 
seq2  AATAAAAAATTTTAAAA  67