BAC Information

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BAC

Clone NameB6Ng01-043J07
ChromosomeY (Build37)X (Build37)
Map Location 573,321 - 573,35669,844,956 - 69,846,068
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043J07.bB6Ng01-043J07.g
ACCDH869599DH869600
length5001,096
definitionDH869599|Mus musculus domesticus DNA, BAC clone: B6Ng01-043J07, 5' end.DH869600|Mus musculus domesticus DNA, BAC clone: B6Ng01-043J07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,356)(69,844,956 - 69,846,068)
sequence
gaattcctaggcaaatggatggacctggagggcatcatccagagtgaggt
aacccaatcacaaaagaactcacacaatatgtactcactgataagtggat
attagtccagaaacttaggacagccaagatataagatacaatttgctaaa
tgcatgaaactcaagaagaacgaagaccaaagtgtggacactttgcccct
tcttagaactgggaacaaaacacccatggaaggagttacagagacaaagt
tggagctgtgacaaaaggatggaccatctagagactgccatatccgggga
tccatcccataatcagcttccaaacgctgacaccactgcacacactagca
agattttgctgaaaggacccagatatagctgtctcttgtgagactatgcc
agggcctagcaaacacagaagtggatactcacagtcagctattggatgga
ccacagggccaccaatggaggagctagagaaagtacccaaggagctaaag

gaattcctgtttctgactgagacattccttgctgagacatgagcaagcca
tactataagttcttttcgtgcctgtcacaaaataaatgtctcccttcaga
tacttttgtcaataatttggtcatagcaatgaaaaaatcagttaatataa
taactaaacttccagatggaaaattatataagccaaaggaatatcaacta
agtattaaacaagaatatgaccacttatttcctaggtcaaagctatcctt
aggatcaaaaaatctccaacttgaacaattatatagtcataattaaagaa
aattttaaaaatgtagacagtcaaatataataacaaattataaatgagat
agcccattacatagttattgactttatggcaagtaactgatagtatgcca
caaatagaactaaagattttttttttcaaagtaaaatcttttccaggggc
agaaaagaactaacatttgtttcaagtaagaattaaataaccgaaacaac
actatgagcactgagccatcagtctactggataataaatcagtcatgatt
tgaaagaccaaaaaagtataaaattagaaacatgagattgtaagccagca
agctcgctccaccattaaatatgcttgctacaaagccttatgacctgagt
ctgacccccaggacccacaaaatgaaagcaaagaactactaacttctaca
agttgacctccacaagtatgtcatgatacacatgcacacatactcacaag
taaatcaaaagatgtagtaactttttaagaattatgcaaactacaaatgg
ttgatattccaacattataaagaatatttgaagaaaagtttaaccaaaag
cctttttaacgttgaaaaatggctattttcctgttataatcagcgtcaca
gtgtttattctcaaactcttacatgacagtggaatcttaagcagtatagc
agaaatgacagtggaaaggggataatggaaaggctgaaagtaaagcaggc
agattctatactactaacaacaaagactaccaacactaaaatctgcacac
tgaatatactagccttttatttttttcatttgctgtacagttagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573356
seq2: B6Ng01-043J07.b_509_544

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAG  36
      ||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAG  36

seq1: chrX_69844956_69846068
seq2: B6Ng01-043J07.g_69_1164

seq1  GAATTCCTGTTTCTGACTGAGACATTCCTTGCTGAGACATGAGCAAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTTTCTGACTGAGACATTCCTTGCTGAGACATGAGCAAGCCA  50

seq1  TACTATAAGTTCTTTTCGTGCCTGTCACAAAATAAATGTCTCCCTTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATAAGTTCTTTTCGTGCCTGTCACAAAATAAATGTCTCCCTTCAGA  100

seq1  TACTTTTGTCAATAATTTGGTCATAGCAATGAAAAAATCAGTTAATATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTGTCAATAATTTGGTCATAGCAATGAAAAAATCAGTTAATATAA  150

seq1  TAACTAAACTTCCAGATGGAAAATTATATAAGCCAAAGGAATATCAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAACTTCCAGATGGAAAATTATATAAGCCAAAGGAATATCAACTA  200

seq1  AGTATTAAACAAGAATATGACCACTTATTTCCTAGGTCAAAGCTATCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTAAACAAGAATATGACCACTTATTTCCTAGGTCAAAGCTATCCTT  250

seq1  AGGATCAAAAAATCTCCAACTTGAACAATTATATAGTCATAATTAAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAAAAAATCTCCAACTTGAACAATTATATAGTCATAATTAAAGAA  300

seq1  AATTTTAAAAATGTAGACAGTCAAATATAATAACAAATTATAAATGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAAAATGTAGACAGTCAAATATAATAACAAATTATAAATGAGAT  350

seq1  AGCCCATTACATAGTTATTGACTTTATGGCAAGTAACTGATAGTATGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATTACATAGTTATTGACTTTATGGCAAGTAACTGATAGTATGCCA  400

seq1  CAAATAGAACTAAAGATTTTTTTTTTCAAAGTAAAATCTTTTCCAGGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGAACTAAAGATTTTTTTTTTCAAAGTAAAATCTTTTCCAGGGGC  450

seq1  AGAAAAGAACTAACATTTGTTTCAAGTAAGAATTAAATAACCGAAACAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAACTAACATTTGTTTCAAGTAAGAATTAAATAACCGAAACAAC  500

seq1  ACTATGAGCACTGAGCCATCAGTCTACTGGATAATAAATCAGTCATGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGAGCACTGAGCCATCAGTCTACTGGATAATAAATCAGTCATGATT  550

seq1  TGAAAGACCAAAAAAGTATAAAATTAGAAACATGAGATTGTAAGCCAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGACCAAAAAAGTATAAAATTAGAAACATGAGATTGTAAGCCAGCA  600

seq1  AGCTCGCTCCACCATTAAATATGCTTGCTACAAAGCCTTATGACCTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGCTCCACCATTAAATATGCTTGCTACAAAGCCTTATGACCTGAGT  650

seq1  CTGACCCCCAGGACCCACAAAATGAAAGCAAAGAACTACTAACTTCTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCCCAGGACCCACAAAATGAAAGCAAAGAACTACTAACTTCTACA  700

seq1  AGTTGACCTCCACAAGTATGTCATGATACACATGCACACATACTCACAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGACCTCCACAAGTATGTCATGATACACATGCACACATACTCACAAG  750

seq1  TAAATCAAAAGATGTAGTAACTTTTTAAGAATTATGCAAACTACAAATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAAAAGATGTAGTAACTTTTTAAGAATTATGCAAACTACAAATGG  800

seq1  TTGATATTCCAACATTATAAAGAATATTTGAAGAAAAGTTTAACCAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATTCCAACATTATAAAGAATATTTGAAGAAAAGTTTAACCAAAAG  850

seq1  CCTTTTTAACGTTGAAAAATGGCTATTTTCCTGTTATAATCAGCGTCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTAACGTTGAAAAATGGCTATTTTCCTGTTATAATCAGCGTCACA  900

seq1  GTGTTTATTCTCAAAACTCTTACAATGACAGTGGAATCTTAAGCAGTATA  950
      |||||||||||| |||||||||| ||||||||||||||||||||||||||
seq2  GTGTTTATTCTC-AAACTCTTAC-ATGACAGTGGAATCTTAAGCAGTATA  948

seq1  GCAAGAAATGACAGTGGAAAGGGGAAAATGGAAAGGCTGAAAGTAAAGCA  1000
      || |||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GC-AGAAATGACAGTGGAAAGGGGATAATGGAAAGGCTGAAAGTAAAGCA  997

seq1  AGGCCAGATTCCTATAACTAACTAACAAACACAGACTAACATACACTAAA  1050
        | |||||| |||| ||| |||||| |||| |||||| || |||||  |
seq2  --GGCAGATT-CTAT-ACT-ACTAAC-AACAAAGACTACCA-ACACT--A  1038

seq1  AAATCTGCACACTGATATTAATACTAGCCCTATTATTTTTTTCATTTTGC  1100
      ||||||||||||||| ||  ||||||| ||| |||||||||||| |||||
seq2  AAATCTGCACACTGA-AT--ATACTAG-CCTTTTATTTTTTTCA-TTTGC  1083

seq1  TGTACAGTTAGTT  1113
      |||||||||||||
seq2  TGTACAGTTAGTT  1096