BAC Information

Click to search

BAC

Clone NameB6Ng01-043L10
ChromosomeY (Build37)
Map Location 87,655 - 88,910
singlet/doubletsinglet
Overlap geneZfy1
Upstream geneLOC100039202
Downstream geneUbe1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043L10.bB6Ng01-043L10.g
ACCDH869693DH869694
length1,2521,221
definitionDH869693|Mus musculus domesticus DNA, BAC clone: B6Ng01-043L10, 5' end.DH869694|Mus musculus domesticus DNA, BAC clone: B6Ng01-043L10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacaccaccaatctaaacaaaataaaagaaatagactgcaagcca
acagccaacatcaaattaaatggagagaaacttgaaacaatcccactaaa
acctggcacaagtttgtccactctttccttatttactcaatatagtattt
ggagttctagctggagcaattagacaactaaaggagatcaaggggataaa
aattgcaaaggaagaagtcaaggtatcactcttcgtggatgatagaatag
tataaataagtcaccccccaaattctaccggagaagtcctacatgtgata
aacaactttagcaaagtggagtgatatacagttagctcaaacaaatcagg
agtatcctttatacaaatgacaaatgggctgggaaagaattaagggaaac
aacaaccttcacaataccacagatactataaaatagcttgtgtaactcta
accaatcaagtgaaagatctaggggctggagagatggctcagcggttaag
aacactgactgcttttccagaagtcctgagttcaattcccagcaaccaca
ttgtggctcacaaccatctgtaatgaggtccgactccttcttctgatgtc
tgaagggagcaatggtgatgtactcatatgcataaaataaataaatttaa
aaaatcttttaaaaagaaaaaagtaaaagatctgtatgacaagaatttca
agtccctgaaaaaagaaagtgaggaagttagaggagatggagagatctcc
catgtccatggattggtgcattaacatagtgaaaatgaccatcatattga
aagcaatctacagattcaatgcttaaaaattccatcacaattttcacaga
gcaatgtaaagagcaattatcaacttcactgtaacctccccccaccccct
cagcctgaaacctggctgatctggtttcactgtttagctcgaagagagct
tgggggtagagcctgccaccctatcattctgccactcccactgctactgc
ctgctgcctagctgttctggactatcacgggtcacctgaaactggactca
gatgattggagggaatgggcctcttcccttcttctaacccagggttctga
tagtaaaatgaacctgaatcgactgtttcttggtttcatcttttcggcgg
cgcctagttctctcctttcggattcaagaggcctcgactagaatcgacat
tggcacatgacgaccgcataccttctactgaaaccacatcatagaaccta
cg
gaattccagagaacaaagaggttgcaaagcctggaggcgagaactggctt
ttcccaaccccattataatatgtagtctgctagtgccagagagagctgag
aacttccttatttcaattcagggcagatgaattcaggaaattcattctct
aaacattctttttatttctcttttactattactcaatctctactattgca
catgtgtctcataaaagttttgcttttgtttatatatggcttaattaagt
tttaagatttctgtgtatgattcttcatatactcctaccttctgctatct
tgtactatacatttcacagttcacttccacttgtttctcttttattactc
cttttaattatattctttaattacaacctttagtagtattaatagtctct
aaaatgagtgtaccttaacagcatctcaactttccgcttgaagctactta
atacccacctcgatttttttaaagttgattaatgtttattcctgtcctac
attatttcccatccctaattcattaactaaaattgaagtgctccaagctg
tcttttattattttttctccaagagttattaaaatcaaagggataactat
agataattgtctaccataacattgcaaaatggtaagtaacatctagcagc
cactggtgttttgtgattaatattctaattctggataatacagcacacat
ttgagctcttggtctgagggaaagttttctgaaacttcaacgtacttcaa
cgtacgtacttcaactctgcaatcaatatctattccccatatccacaatg
caattactttcaactgaaaaaaagtcataaaaacaaatttaaaaccaaag
caatctaactcttctaaattaccaattctacagttatagattatttttta
gttatttaaatctcagatagtcattcaaaacattagcatgtgcaacaaag
aagctcttcattgagaatacaaatagctgagtgaaatacagagatgatgg
taagatatgacagagtacctcataaagaggaatataaaatcacagaaata
cttaggattattttagtgtcaaataaagctgggtaacccttccggtcgac
tcgggactcgagcccaagctacttgcagacaggtcttggcccacacccgc
agctcacggactccaaggaacctagaccttgtgagtgaaccaggcgtgcc
aatccaatcgcgcgaacttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_87655_88910
seq2: B6Ng01-043L10.g_69_1289

seq1  GAATTCCAGAGAACAAAGAGGTTGCAAAGCCTGGAGGCGAGAACTGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGAACAAAGAGGTTGCAAAGCCTGGAGGCGAGAACTGGCTT  50

seq1  TTCCCAACCCCATTATAATATGTAGTCTGCTAGTGCCAGAGAGAGCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAACCCCATTATAATATGTAGTCTGCTAGTGCCAGAGAGAGCTGAG  100

seq1  AACTTCCTTATTTCAATTCAGGGCAGATGAATTCAGGAAATTCATTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCTTATTTCAATTCAGGGCAGATGAATTCAGGAAATTCATTCTCT  150

seq1  AAACATTCTTTTTATTTCTCTTTTACTATTACTCAATCTCTACTATTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTCTTTTTATTTCTCTTTTACTATTACTCAATCTCTACTATTGCA  200

seq1  CATGTGTCTCATAAAAGTTTTGCTTTTGTTTATATATGGCTTAATTAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTCTCATAAAAGTTTTGCTTTTGTTTATATATGGCTTAATTAAGT  250

seq1  TTTAAGATTTCTGTGTATGATTCTTCATATACTCCTACCTTCTGCTATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATTTCTGTGTATGATTCTTCATATACTCCTACCTTCTGCTATCT  300

seq1  TGTACTATACATTTCACAGTTCACTTCCACTTGTTTCTCTTTTATTACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTATACATTTCACAGTTCACTTCCACTTGTTTCTCTTTTATTACTC  350

seq1  CTTTTAATTATATTCTTTAATTACAACCTTTAGTAGTATTAATAGTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATTATATTCTTTAATTACAACCTTTAGTAGTATTAATAGTCTCT  400

seq1  AAAATGAGTGTACCTTAACAGCATCTCAACTTTCCGCTTGAAGCTACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGTGTACCTTAACAGCATCTCAACTTTCCGCTTGAAGCTACTTA  450

seq1  ATACCCACCTCGATTTTTTTAAAGTTGATTAATGTTTATTCCTGTCCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCACCTCGATTTTTTTAAAGTTGATTAATGTTTATTCCTGTCCTAC  500

seq1  ATTATTTCCCATCCCTAATTCATTAACTAAAATTGAAGTGCTCCAAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCCCATCCCTAATTCATTAACTAAAATTGAAGTGCTCCAAGCTG  550

seq1  TCTTTTATTATTTTTTCTCCAAGAGTTATTAAAATCAAAGGGATAACTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATTATTTTTTCTCCAAGAGTTATTAAAATCAAAGGGATAACTAT  600

seq1  AGATAATTGTCTACCATAACATTGCAAAATGGTAAGTAACATCTAGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTGTCTACCATAACATTGCAAAATGGTAAGTAACATCTAGCAGC  650

seq1  CACTGGTGTTTTGTGATTAATATTCTAATTCTGGATAATACAGCACACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTGTTTTGTGATTAATATTCTAATTCTGGATAATACAGCACACAT  700

seq1  TTGAGCTCTTGGTCTGAGGGAAAGTTTTCTGAAACTTCAACGTACTTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTCTTGGTCTGAGGGAAAGTTTTCTGAAACTTCAACGTACTTCAA  750

seq1  CGTACGTACTTCAACTCTGCAATCAATATCTATTCCCCATATCCACAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACGTACTTCAACTCTGCAATCAATATCTATTCCCCATATCCACAATG  800

seq1  CAATTAC-TTCAACTGAAAAAAAGTCATAAAAACAAATTTAAAAACCAAA  849
      ||||||| |||||||||||||||||||||||||||||||| |||||||||
seq2  CAATTACTTTCAACTGAAAAAAAGTCATAAAAACAAATTT-AAAACCAAA  849

seq1  GCAATCTAACTCTTCTAAAATTACCAATTCTACAGTTATAGATTA-TTTT  898
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  GCAATCTAACTCTTCT-AAATTACCAATTCTACAGTTATAGATTATTTTT  898

seq1  TAGTTATTTAAAATCTCAAGATAGTCAATTCAAAACATTAGCATGTGCAA  948
      ||||||||| ||||||| |||||||| |||||||||||||||||||||||
seq2  TAGTTATTT-AAATCTC-AGATAGTC-ATTCAAAACATTAGCATGTGCAA  945

seq1  CAAAGAAGCTCCTCATTGAGAATACAAATAGCTGAGTGAAATACAGAAGA  998
      ||||||||||| |||||||||||||||||||||||||||||||||| |||
seq2  CAAAGAAGCTCTTCATTGAGAATACAAATAGCTGAGTGAAATACAG-AGA  994

seq1  TGATGGTAAGATATGACAGAGTAACTCAATAAAGAGGAATAATAAAAATC  1048
      ||||||||||||||||||||||| ||| |||||||||||||   ||||||
seq2  TGATGGTAAGATATGACAGAGTACCTC-ATAAAGAGGAATA--TAAAATC  1041

seq1  AACCAGAAATACTTAGGAATAAATTTAGTGGTCAAATTAAAAGCTGGGTA  1098
      |  |||||||||||||| || | |||||| |||||||  |||||||||| 
seq2  A--CAGAAATACTTAGG-ATTATTTTAGT-GTCAAAT--AAAGCTGGGT-  1084

seq1  AACCCTTCCGCTCGACTCGAGACTCGAGCCCCAGGCTACCTTGCCAGCAG  1148
      |||||||||| |||||||| |||||||| |||| |||| |||||   |||
seq2  AACCCTTCCGGTCGACTCGGGACTCGAG-CCCAAGCTA-CTTGCAGACAG  1132

seq1  AGTCTTGCCCAACACCCGCAAGGGCCCACACGGGACTCCCCACGGGACCC  1198
       |||||| || |||||||||   || |||   |||||  ||| || ||| 
seq2  -GTCTTGGCCCACACCCGCA---GCTCAC---GGACT--CCAAGGAACC-  1172

seq1  TAAGACCTCTGGTGAGTGGAACACAGCGCCTGCCCCAATCCAATCGCGCG  1248
        ||||  || |||||| |||| ||| || ||  ||||||||||||||| 
seq2  -TAGAC--CTTGTGAGT-GAAC-CAG-GCGTG--CCAATCCAATCGCGC-  1213

seq1  GAACTTGA  1256
      ||||||||
seq2  GAACTTGA  1221