BAC Information

Click to search

BAC

Clone NameB6Ng01-045I24
Chromosome3 (Build37)Y (Build37)
Map Location 16,987,923 - 16,988,614573,321 - 573,550
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneYthdf3, LOC100040034
Downstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045I24.bB6Ng01-045I24.g
ACCDH870985DH870986
length1,042281
definitionDH870985|Mus musculus domesticus DNA, BAC clone: B6Ng01-045I24, 5' end.DH870986|Mus musculus domesticus DNA, BAC clone: B6Ng01-045I24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(16,987,923 - 16,988,614)(573,321 - 573,550)
sequence
gaattcttggtttagttgtataccctatttttgggttgtgatgtttggtt
cttttggagattaacttcttgaggtttttttttttaaatatattttttat
attagccctctattgaatgtggggttagtgaagatatttttcccaatgtg
tagtaaataagatttgccttacatactaagtactttgcctacagacgttt
tcatgtttcatgaggtcccatttattgaattttgatcttagaacatgagc
cattggagttctttttaggaaatttccccgtgtgccgaagagtttgaggc
tctttcccagtttcctttctattagattcagtgtatctgattttatgttg
aattcctggatccacttgtacttgagctttgtataaggtgataaatatgg
gtctattttcattcttctacatcctgacagccagttaaagcagaatcatt
tattgaagatgcttttttccattgtttattattggcatctttgtcaaaga
tcaaatgtctgtaagtgtgtgattttatttctgggtctttcaatttcatt
ttcattgatcaacatgtctgtctctgtaccaataccatgcagcttttttt
actgttgctctatagtaaagtttgaggtcagggatgatgattcccccagc
tgttcttttattgttaagaagtgtttttctctagtctggtgttttttgcc
cttccaaaatgaatttgagaatttctcttttccatgtctttgaagaattg
tctggtgattttaaagaaggattgtatttgaatctatagattgccttttg
gtaggatgggcagtttttactatattttcttaaaattgctgtctctgtag
ctcagaagtctccagagcatcttgaatcagagaccatcaacagagcacct
gagataccatgcactgagcattaatgacctttcatttaagttttatctca
actaatactttagccatgtccttgggacatagccctaactcctctggact
cccaaggttcttatagaggtaattccacctgtccttttcagc
tcagaagtggatgatcacagtcagctattggatggaacacagggccccca
atggaggagctagagaaagtacccaaggagctaaagaggtctgcaaccct
ctaggtggaacaacaatatgaactaaccagtacccccagagctcctgtct
ctagccgcatatgtatcagaagatggcctagtcagccatcattggaaaga
gaggcaccttggtcttgcaaactttatatacctcagtacaggggaatgcc
agggccaagaagtgggagtgggtgggtaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_16987923_16988614
seq2: B6Ng01-045I24.b_385_1086

seq1  TTTTATGTTGAATTCCTGGATCCACTTGTACTTGAGCTTTGTATAAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTTGAATTCCTGGATCCACTTGTACTTGAGCTTTGTATAAGGTG  50

seq1  ATAAATATGGGTCTATTTTCATTCTTCTACATCCTGACAGCCAGTTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATGGGTCTATTTTCATTCTTCTACATCCTGACAGCCAGTTAAAG  100

seq1  CAGAATCATTTATTGAAGATGCTTTTTTCCATTGTTTATTATTGGCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCATTTATTGAAGATGCTTTTTTCCATTGTTTATTATTGGCATCT  150

seq1  TTGTCAAAGATCAAATGTCTGTAAGTGTGTGATTTTATTTCTGGGTC-TT  199
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTGTCAAAGATCAAATGTCTGTAAGTGTGTGATTTTATTTCTGGGTCTTT  200

seq1  CAATTTCA-TTTCATTGATCAACATGTCTGTCTCTGTACCAATACCATGC  248
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCATTTTCATTGATCAACATGTCTGTCTCTGTACCAATACCATGC  250

seq1  AGCTTTTTTTACTGTTGCTCTATAGTAAAGTTTGAGGTCAGGGATGATGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTTTTACTGTTGCTCTATAGTAAAGTTTGAGGTCAGGGATGATGA  300

seq1  TTCCCCCAGCTGTTCTTTTATTGTTAAGAAGTG-TTTTCTCTAGTCT-GT  346
      ||||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  TTCCCCCAGCTGTTCTTTTATTGTTAAGAAGTGTTTTTCTCTAGTCTGGT  350

seq1  GTTTTTTGCCTTTCC-AAATGAATTTGAGAATTTCTC-TTTCCATGTCTT  394
      |||||||||| |||| ||||||||||||||||||||| ||||||||||||
seq2  GTTTTTTGCCCTTCCAAAATGAATTTGAGAATTTCTCTTTTCCATGTCTT  400

seq1  TGAAGAATTGTCTTGTGATTTTGAAG-AGGATTGTA-TTGAATCTATAGA  442
      ||||||||||||| |||||||| ||| ||||||||| |||||||||||||
seq2  TGAAGAATTGTCTGGTGATTTTAAAGAAGGATTGTATTTGAATCTATAGA  450

seq1  TTGCC-TTTGGTAGGAT-GGCAGTTTTTACTATA-TTTCTTAAAA-TGCT  488
      ||||| ||||||||||| |||||||||||||||| |||||||||| ||||
seq2  TTGCCTTTTGGTAGGATGGGCAGTTTTTACTATATTTTCTTAAAATTGCT  500

seq1  GTCTCTGTAGCTCAGAAGTCTCCAGAGCATCTTGAATCAGAGACCATCAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTAGCTCAGAAGTCTCCAGAGCATCTTGAATCAGAGACCATCAA  550

seq1  CAGAGCA-CTGAGATAACCATGCACTGAGCATTAATGACCTTTCATTTAA  587
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  CAGAGCACCTGAGAT-ACCATGCACTGAGCATTAATGACCTTTCATTTAA  599

seq1  GTTTTACCTCAACT-ATACTTTAGCCATGTACTTTGGGACATAGGCCCTA  636
      |||||| ||||||| ||||||||||||||| | |||||||||| ||||||
seq2  GTTTTATCTCAACTAATACTTTAGCCATGT-CCTTGGGACATA-GCCCTA  647

seq1  ACCTCTCT-GACCTCAAAAGTTCTATAAGATGGTAATTTCCCACTGTCCT  685
      ||  |||| |||  | || |||||   ||| ||||| ||||  |||||||
seq2  ACTCCTCTGGACTCCCAAGGTTCTTATAGA-GGTAA-TTCCACCTGTCCT  695

seq1  TTTCAGC  692
      |||||||
seq2  TTTCAGC  702

seq1: chrY_573321_573550
seq2: B6Ng01-045I24.g_122_352

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      |||||||||||||||||||||||||||||||||||| | ||||||| |||
seq2  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGAGGTCTGCAACCCT  50

seq1  ATAGATGGAACAACAATATGAA-TAACCAGTATCCACAGAGCTCATGTCT  99
       ||| ||||||||||||||||| ||||||||| || |||||||| |||||
seq2  CTAGGTGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCCTGTCT  100

seq1  CTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAAGA  149
      ||||| ||||||||||||||||||||||||||  ||||||||||| ||||
seq2  CTAGCCGCATATGTATCAGAAGATGGCCTAGTCAGCCATCATTGGAAAGA  150

seq1  GAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAACACC  199
      ||||| ||||||||||||||||||||||| || |||||||||||||  ||
seq2  GAGGCACCTTGGTCTTGCAAACTTTATATACCTCAGTACAGGGGAATGCC  200

seq1  AGGGCCAAGAAGTGGGAGAAGGTGGGTAGGG  230
      ||||||||||||||||||  |||||||||||
seq2  AGGGCCAAGAAGTGGGAGTGGGTGGGTAGGG  231