BAC Information

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BAC

Clone NameB6Ng01-045J07
Chromosome8 (Build37)Y (Build37)
Map Location 105,294,332 - 105,295,4501,870,346 - 1,870,460
singlet/doubletsingletsinglet
Overlap geneCdh11
Upstream genenone
Downstream geneEG667618, LOC100041368, 1600027J07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045J07.bB6Ng01-045J07.g
ACCDH870996DH870997
length1,114500
definitionDH870996|Mus musculus domesticus DNA, BAC clone: B6Ng01-045J07, 5' end.DH870997|Mus musculus domesticus DNA, BAC clone: B6Ng01-045J07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(105,294,332 - 105,295,450)(1,870,346 - 1,870,460)
sequence
gaattcaaatcctctaaaattgtcttcatgccatttcaggctcttattac
aaggctatcaagaaaaaccagtaaaataagttatagaaggtctggttcca
ggcactgagtcaagaacttcataaggatcaatgaatgatcagtggtaaat
ttcacgaatcacccagtagaaacgtcttaaatctgttggctgtaacaaac
agagaacaaaacacagaaactctgtgctcaaattagtgtctctccacttt
tcaactacacaacattatgaaaagtgttttggccacccctcatcttactt
tctaccttttatagatggagataattacaatttccacctcattgaggttg
tactaaagatggatagaggtaattcgtggaaagtgctgagcatggtgtgt
tcattttagctattacaatagtgcctcagtcaatatggagcatctacacc
atggttttcctcatgcagactttatccctgagagttttgcttcttcctat
tattttttgtctattctggtcctgaaattacttaacaaaactcttgacac
tcccctgtttaatatctttaaagaaaaaagaaaaaagaaaaagaaaaaac
ttcccagtatttaaggaataataccaaagccttgaagttgatattcaggt
atcgctttcataaaggggtccaagcttgggtgccactactacgagggaca
tctactctgttcagaaaaacaacatctgtgcattcacatcctgctacttt
tgctttgagtgtcccctgctctagaattctaagatgtgagggtcagcaag
cactaggtcaaatgatttctgaataagatttgagagccagactaatttta
gagctggacagttcccaaaataccacttttacagatgagaagactgaagg
tcagttggcttctcatggtctctgagctgtttatcagcaaagcctttact
gccactgcttggctgcttcagggaagagtctcagggcagcctattatgaa
aatttttgttcagcattggcccaagttgctgacaattgattttttgtcat
tgtgagaaatggaacggaggtatacaccttgtaaaaaaacataagctttg
ttttgctcgtatcc
gaattctttgtttagctctgtaccccaattttaatggggttatttgaatt
tctggagttcagcttcttgagctctttgtatatattgtatattagtcccc
tatcagatttaggattggtaaaaatcctttcctcccatggaaggagttac
agagacggagtttggagctgagatgaaaggatggaccatgtagagactgc
catagccagggatccaccccataatcagcatccaaacgctgacaccattg
catacactagcaagattttattgaaaggacgcagatgtagctgtctcttg
tgagactatgccggggcccagcaaacacagaagtggatgctcacagtcag
ctaatggatggatcatagggctcccaatggaggagctagagaaagtagcc
aaggagctaaagggatctgcaaccctataggtggaacaacattatgagct
aaccagtaccccggagctcttgactctagctgcatatatatcaaaagatg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_105294332_105295450
seq2: B6Ng01-045J07.b_46_1159

seq1  GAATTCAAATCCTCTAAAATTGTCTTCATGCCATTTCAGGCTCTTATTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCCTCTAAAATTGTCTTCATGCCATTTCAGGCTCTTATTAC  50

seq1  AAGGCTATCAAGAAAAACCAGTAAAATAAGTTATAGAAGGTCTGGTTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTATCAAGAAAAACCAGTAAAATAAGTTATAGAAGGTCTGGTTCCA  100

seq1  GGCACTGAGTCAAGAACTTCATAAGGATCAATGAATGATCAGTGGTAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGAGTCAAGAACTTCATAAGGATCAATGAATGATCAGTGGTAAAT  150

seq1  TTCACGAATCACCCAGTAGAAACGTCTTAAATCTGTTGGCTGTAACAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGAATCACCCAGTAGAAACGTCTTAAATCTGTTGGCTGTAACAAAC  200

seq1  AGAGAACAAAACACAGAAACTCTGTGCTCAAATTAGTGTCTCTCCACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACAAAACACAGAAACTCTGTGCTCAAATTAGTGTCTCTCCACTTT  250

seq1  TCAACTACACAACATTATGAAAAGTGTTTTGGCCACCCCTCATCTTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTACACAACATTATGAAAAGTGTTTTGGCCACCCCTCATCTTACTT  300

seq1  TCTACCTTTTATAGATGGAGATAATTACAATTTCCACCTCATTGAGGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTTTTATAGATGGAGATAATTACAATTTCCACCTCATTGAGGTTG  350

seq1  TACTAAAGATGGATAGAGGTAATTCGTGGAAAGTGCTGAGCATGGTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAAGATGGATAGAGGTAATTCGTGGAAAGTGCTGAGCATGGTGTGT  400

seq1  TCATTTTAGCTATTACAATAGTGCCTCAGTCAATATGGAGCATCTACACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTAGCTATTACAATAGTGCCTCAGTCAATATGGAGCATCTACACC  450

seq1  ATGGTTTTCCTCATGCAGACTTTATCCCTGAGAGTTTTGCTTCTTCCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTCCTCATGCAGACTTTATCCCTGAGAGTTTTGCTTCTTCCTAT  500

seq1  TATTTTTTGTCTATTCTGGTCCTGAAATTACTTAACAAAACTCTTGACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTGTCTATTCTGGTCCTGAAATTACTTAACAAAACTCTTGACAC  550

seq1  TCCCCTGTTTAATATCTTTAAAGAAAAAAGAAAAAAGAAAAAGAAAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGTTTAATATCTTTAAAGAAAAAAGAAAAAAGAAAAAGAAAAAAC  600

seq1  TTCCCAGTATTTAAGGAATAATACCAAAGCCTTGAAGTTGATATTCAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTATTTAAGGAATAATACCAAAGCCTTGAAGTTGATATTCAGGT  650

seq1  ATCGCTTTCATAAAGGGGTCCAAGCTTGGGTGCCACTACTACGAGGGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTTTCATAAAGGGGTCCAAGCTTGGGTGCCACTACTACGAGGGACA  700

seq1  TCTACTCTGTTCAGACAAACAACATCTGTGCATTCACATCCTGCTAC-TT  749
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  TCTACTCTGTTCAGAAAAACAACATCTGTGCATTCACATCCTGCTACTTT  750

seq1  TGCTTTGAGTGTCCCCTGCTCTAGAATCCTAAGATGTGAGGGTCAGCAAG  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGCTTTGAGTGTCCCCTGCTCTAGAATTCTAAGATGTGAGGGTCAGCAAG  800

seq1  CACTAGGTCAAATGATTTCTGAATAAAGATTTGAGAGCCAGACT-ATTTT  848
      |||||||||||||||||||||||| ||||||||||||||||||| |||||
seq2  CACTAGGTCAAATGATTTCTGAAT-AAGATTTGAGAGCCAGACTAATTTT  849

seq1  AGAGCTGGACAGTCCCCAAAATACCAC-TTTACAGATGAGAAGACTG-AG  896
      ||||||||||||| ||||||||||||| ||||||||||||||||||| ||
seq2  AGAGCTGGACAGTTCCCAAAATACCACTTTTACAGATGAGAAGACTGAAG  899

seq1  GTCAGTTGGCTTCTCATGGTCTCTGAGCTGTTTATCAGCAAAGCCTTTAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTGGCTTCTCATGGTCTCTGAGCTGTTTATCAGCAAAGCCTTTAC  949

seq1  TG-CACTGCTGGGCTGCCTCCAGGGAAAGAGCCTCAGGGCAGCCTATTAG  995
      || ||||||| ||||| || ||||| ||||| ||||||||||||||||| 
seq2  TGCCACTGCTTGGCTG-CTTCAGGG-AAGAGTCTCAGGGCAGCCTATTAT  997

seq1  GAAAAATATTTGTCAGCAATTGGCCACAAAGTTGCTGACAAATGATCTTT  1045
      ||||| | ||  ||||| ||||||  | ||||||||||||| |||| |||
seq2  GAAAATTTTTGTTCAGC-ATTGGC--CCAAGTTGCTGACAATTGATTTTT  1044

seq1  GTCCATTTGTGAGAAATGGGACAGGAGGTATACACCTAGTAAGAAAAAAA  1095
         || ||||||||||||| || |||||||||||||| ||   |||||||
seq2  TGTCA-TTGTGAGAAATGGAAC-GGAGGTATACACCTTGT---AAAAAAA  1089

seq1  CATAAGGCTTGTTTTGCT-GTATCC  1119
      ||||||  |||||||||| ||||||
seq2  CATAAGCTTTGTTTTGCTCGTATCC  1114

seq1: chrY_1870346_1870460
seq2: B6Ng01-045J07.g_453_567

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||| ||||||| |||||| |||||||||||||| |||||||
seq2  ACAACATTATGAGCTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATG  115
      |  ||||||||||||
seq2  ATATATCAAAAGATG  115