BAC Information

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BAC

Clone NameB6Ng01-045M02
ChromosomeY (Build37)3 (Build37)
Map Location 1,120,586 - 1,120,73338,490,324 - 38,491,409
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045M02.bB6Ng01-045M02.g
ACCDH871121DH871122
length8351,083
definitionDH871121|Mus musculus domesticus DNA, BAC clone: B6Ng01-045M02, 5' end.DH871122|Mus musculus domesticus DNA, BAC clone: B6Ng01-045M02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,586 - 1,120,733)(38,490,324 - 38,491,409)
sequence
gaattcatcaattttaatagctgagtagtactccattgtgtaaatgtacc
acatattctgtatccactcctctgttgaaggacatctgggttcgttccag
ctcctggctattataaataaggatgctacaaacatagtgtagcatgtgtc
tttactacatgttgtagcatcttctgggtatatgcccaggagtggtatag
ctgggtcctcaggtagtattatgtccagttttctgaggaactgccaaact
gatttccagagtggttgtgccagcttgcaatcccacaaacaatgaaggag
tgtttctctttctccatatccttgccagcatctgctgtcacctgagggtt
tttttttaattaatttttttattaggtattttccttatttacatttccaa
tgctatccaaaaagtccccaatacactccctcccccattcccctacccac
ctactcccactttttggccctggcgttcccctgtactggggcatataaag
tttgcacgaccaatgggcctttctttccagtgatggccgactaggccatc
ttttgatacatatgcagctagagtcaagagctctggagtactggttagtt
cataatgttgttccacctatggggttgcagatccctttagctccttgggt
actttctctagctcctccattgggggccctgtgatccatccaatagctga
ctgtgagcatccacttctgtgttagctaggccccggcatagtctcacaag
aaacagctatatctgggtcctttcagcaaaatcttgctagtgtatgcaat
gttgtcagcgtttggaagctgattatgggatggat
gaattcatcccctcctccccgtgattaagtcacttgttctgcagctgctg
ctcctggtgggactggaacatcctggtatattcagatctccacagcacat
tataaaataatgtcactaggcccttactggtcactagagaaggagactga
tgtattaaaaggccaagaggatccctaaagtatagcaggagttcacagca
catctgttgcaaagttttctggcacccacacagcatcaaccatgacctgt
aggagctgcacacaggagcatcacagacaccatttctatggagcatttgc
agctattgttgtagcaacttctggggctgaccgtcatctgctgctgtgtg
ctgggaacaggtgctatttcagggattttcccacagaaccaagtgtggtg
gtcagaaccttaaatcaaacagtgggagtagacaatgaagcaaaagttaa
atgagcaagtagttcttgctaaaaaaatgtcactacttaggccataaaac
tatattggaaagatatggcaggggaaatgagttatttcattatatatctt
taggataaaatagaactaaataggttttatgtttgaagacagtcccatgt
agttttaagtactcctgatgatggtaacgtatatgtctatgtaccacatg
catgcctggtatggaaggaggtaaaacgaggggtcagatcccctggaact
ggagttacagactgttgtgagtagccaggtgggtgctgggaacctacctt
accatatttttatttctgattttggtattatatacaaatagtgattcctt
aaaacactaatatgggttgatttgatataaaactccaaactatctaaata
gtagaaggagatcatcaaaggggctgcctaacttcttatttgtcttagag
gttttctgggatggaagaatattagtgagaagccaggaaaacttatggta
atttcttttgtcaatgtggttctgtagcatcatagctcaattgagtcttc
aactgcctctcatggccacccttgtctcttttctgatttggctgcggctt
aataggtttcttttattgtttcgatggaaatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120586_1120733
seq2: B6Ng01-045M02.b_396_547

seq1  --TTTTTTT--TTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCC  46
        |||||||  ||   |||||||||||||||||  || ||||||||||||
seq2  TTTTTTTTTAATTAATTTTTTTATTAGGTATTTTCCTTATTTACATTTCC  50

seq1  AATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCC  96
      |||||||| | |||||||||| |||  | ||| |||||| |||||| |||
seq2  AATGCTATCCAAAAAGTCCCCAATACACTCCCTCCCCCATTCCCCTACCC  100

seq1  ACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAA  146
      ||| |||||| ||||||||||||||  |||||||||||||||||||||||
seq2  ACCTACTCCCACTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAA  150

seq1  AG  148
      ||
seq2  AG  152

seq1: chr3_38490324_38491409
seq2: B6Ng01-045M02.g_69_1151

seq1  GAATTCATCCCCTCCTCCCCGTGATTAAGTCACTTGTTCTGCAGCTGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCCCTCCTCCCCGTGATTAAGTCACTTGTTCTGCAGCTGCTG  50

seq1  CTCCTGGTGGGACTGGAACATCCTGGTATATTCAGATCTCCACAGCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGTGGGACTGGAACATCCTGGTATATTCAGATCTCCACAGCACAT  100

seq1  TATAAAATAATGTCACTAGGCCCTTACTGGTCACTAGAGAAGGAGACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATAATGTCACTAGGCCCTTACTGGTCACTAGAGAAGGAGACTGA  150

seq1  TGTATTAAAAGGCCAAGAGGATCCCTAAAGTATAGCAGGAGTTCACAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAAAAGGCCAAGAGGATCCCTAAAGTATAGCAGGAGTTCACAGCA  200

seq1  CATCTGTTGCAAAGTTTTCTGGCACCCACACAGCATCAACCATGACCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTTGCAAAGTTTTCTGGCACCCACACAGCATCAACCATGACCTGT  250

seq1  AGGAGCTGCACACAGGAGCATCACAGACACCATTTCTATGGAGCATTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGCACACAGGAGCATCACAGACACCATTTCTATGGAGCATTTGC  300

seq1  AGCTATTGTTGTAGCAACTTCTGGGGCTGACCGTCATCTGCTGCTGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTGTTGTAGCAACTTCTGGGGCTGACCGTCATCTGCTGCTGTGTG  350

seq1  CTGGGAACAGGTGCTATTTCAGGGATTTTCCCACAGAACCAAGTGTGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAACAGGTGCTATTTCAGGGATTTTCCCACAGAACCAAGTGTGGTG  400

seq1  GTCAGAACCTTAAATCAAACAGTGGGAGTAGACAATGAAGCAAAAGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAACCTTAAATCAAACAGTGGGAGTAGACAATGAAGCAAAAGTTAA  450

seq1  ATGAGCAAGTAGTTCTTGCTAAAAAAATGTCACTACTTAGGCCATAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCAAGTAGTTCTTGCTAAAAAAATGTCACTACTTAGGCCATAAAAC  500

seq1  TATATTGGAAAGATATGGCAGGGGAAATGAGTTATTTCATTATATATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGGAAAGATATGGCAGGGGAAATGAGTTATTTCATTATATATCTT  550

seq1  TAGGATAAAATAGAACTAAATAGGTTTTATG-TTGAAGACAGTCCCATGT  599
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAGGATAAAATAGAACTAAATAGGTTTTATGTTTGAAGACAGTCCCATGT  600

seq1  AGTTTTAAGTACTCCTGATGATGGTAACGTATATGTCTATGTACCACATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAAGTACTCCTGATGATGGTAACGTATATGTCTATGTACCACATG  650

seq1  CATGCCTGGTATGGAAGGAGGTAAAACGAGGGGTCAGATCCCCTGGAACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGGTATGGAAGGAGGTAAAACGAGGGGTCAGATCCCCTGGAACT  700

seq1  GGAGTTACAGACTGTTGTGAGTAGCCAGGTGGGTGCTGGGAACCTACCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTACAGACTGTTGTGAGTAGCCAGGTGGGTGCTGGGAACCTACCTT  750

seq1  ACCATATTTTTATTTCTGATTTTGGTATTATTATACAAATAGTGATTCCT  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACCATATTTTTATTTCTGATTTTGGTATTA-TATACAAATAGTGATTCCT  799

seq1  TAAATACACTAATATGGGTTGATTTGATATAAAACTCCAAACTATCTAAA  849
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAA-ACACTAATATGGGTTGATTTGATATAAAACTCCAAACTATCTAAA  848

seq1  TAGTAGAAAGAGATCATCAAAAGGGCTGCCT-ACTTCTTATTTGTC-TAG  897
      |||||||| |||||||||||| ||||||||| |||||||||||||| |||
seq2  TAGTAGAAGGAGATCATCAAAGGGGCTGCCTAACTTCTTATTTGTCTTAG  898

seq1  AGG-TTTCT-GGATGGAAG-ATATTAGTGAGAAGCCAGGAAACCTTATGG  944
      ||| ||||| ||||||||| |||||||||||||||||||||| |||||||
seq2  AGGTTTTCTGGGATGGAAGAATATTAGTGAGAAGCCAGGAAAACTTATGG  948

seq1  TCATTTCTTTTGTCAATGTTGGTTCTGTAGCAATCAT-GCTCACTTGAGG  993
      | |||||||||||||||| |||||||||||| ||||| ||||| ||||| 
seq2  TAATTTCTTTTGTCAATG-TGGTTCTGTAGC-ATCATAGCTCAATTGAGT  996

seq1  CCTCCCACCTGCCTCTCAT-GCCACCCCTGTCTCTTTTCCTGATTTGGCT  1042
      | |  || ||||||||||| ||||||| |||||||||| |||||||||||
seq2  CTT--CAACTGCCTCTCATGGCCACCCTTGTCTCTTTT-CTGATTTGGCT  1043

seq1  GCGGCTTATAAAGGTTTCTTTTTTATTGTTTTCAATGGAAATGA  1086
      |||||||| | |||||||  |||||||| |||| ||||||||||
seq2  GCGGCTTA-ATAGGTTTC--TTTTATTG-TTTCGATGGAAATGA  1083