BAC Information

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BAC

Clone NameB6Ng01-047K14
ChromosomeY (Build37)16 (Build37)
Map Location 1,120,585 - 1,120,89337,704,413 - 37,705,549
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047K14.bB6Ng01-047K14.g
ACCDH872463DH872464
length9621,118
definitionDH872463|Mus musculus domesticus DNA, BAC clone: B6Ng01-047K14, 5' end.DH872464|Mus musculus domesticus DNA, BAC clone: B6Ng01-047K14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,585 - 1,120,893)(37,704,413 - 37,705,549)
sequence
gaattccttgtttagctctctaccccatttttttttaatttctttttttt
taattaggtattttcctcatttacatttccaatgctatcccaaaagtccc
ccataccctccccccgaccctcccacccacccactcccacttttttggcc
ctggcgttcccctgtactggggcatataaagtttgcaagtccaatgggcc
tctctttccagtgatggccgactaggccatcttttgatacatatgcagct
agagtcaagagctccagggtactggttagtacataatgttgttctaacta
tagggttgtagatccctttagctccttgtctctaccccatttttaatagg
gttatttggttttctggagtgtaacttcttgagttctttgtatatattgg
atattagccctctatcagatataggattggtaaagacttttttcccaatc
tcttggttgccattttgtcttattgacagtgtcctttgccttacagaagc
gctggaattttataaggtcttatttgtcgattgttgatcttagagcattg
gtgttctgttcaggaaattttcccctgtgcccatgtgttcaaggctcttc
ccaactttctcttctattagtttcagtgtatctggttttatgtggaggtc
cttgatccacttggactcgagctttgtaaaaggagataagaatagatcga
tctgcattcttctatatgctgactgccagttgaaccagcaccatttgttg
aaaatgctgtcttttttctactggatggtttagctcatttgtcaaagatc
aagtgattatagatgtgcgggttcatttctgggtctccaattctattcca
ttgatctacctgcctgtctctgtaccaataccaatgcagtttttatcact
attgctctgcaatacagcttgaggtcaggaatggtgattccctcagaagt
tctttattgaga
gaattctcctccacattgttactaatttaagtaaaattgttgaaaaacag
acatgtcccgattctccttcagggttccatgcagatagtgcttggttcag
tgttgggagtgtctcggtctctacttcctgctcactgagagaagagggtt
ttaggaccagaagcacgccactgggccatatgtgtttcctgaaagatgac
attcagagctgaggaaaaaaaaagtaacaagctgacatttgtataacatt
ctatagctttactttcattactttctatttaaggatatattacaggatgg
atgcacagaggggaaaaaaagctgaacacaaatcaacagtaaggttatct
tttaaaaggctgaattcctaccaagacacagccgccgcccctgaactatc
tcatacagctagtgagacaagtctactttggcagagccagctaaatcctg
ctttctgcgtgactcatcacaaaagctgtcaggacaatgaggaggaacta
gaagctacatattaaacaggacagatcggaagagtatttgttcacgtatt
aattatatcagaaggaatacaacctctgatgatcagcaaacaatagtcct
aacgttgtcaggagtgtctctctgggaagtctaatgccatgtataaacag
gcaatgatttttttttaaagatccattttgtcgtgcttctaaatttgagt
gacaagacattttggaaccatcatatttccagaaggttggcattctatta
ttagataattacagtacttaacatgagaaaggatggtaggaatgatattt
taaatatatttccatgattatgagatgtctcttttcatctctaggaagct
gtcttacctcaatgtctacttcagctgatattaaattgtaccatgccaaa
tatgtcgttatctgtactggaaaatcagtcttttatttttaccttcggtt
atgtgtaactggagagacaatataggtggatcttactttaatcagatgac
agattttgtctttacattgattgcagatatgttaagtgataggatccagt
agccacacatcttgcttctgggtgggttcatttttctctttttgcctttt
ttggatatgagaaagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120585_1120893
seq2: B6Ng01-047K14.b_68_375

seq1  ATTTTTT-----TTTCCATTTTTT--ATTAGGTATTTAACTCATTTACAT  43
      |||||||     ||||  ||||||  |||||||||||  |||||||||||
seq2  ATTTTTTTTTAATTTCTTTTTTTTTAATTAGGTATTTTCCTCATTTACAT  50

seq1  TTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCT  93
      |||||||||||| |||||||||||||||| || ||  |||| || | || 
seq2  TTCCAATGCTATCCCAAAAGTCCCCCATACCCTCC--CCCCGACCCTCCC  98

seq1  GCCCACCCACTCCC-CCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCA  142
       ||||||||||||| | |||||||||||||  ||||||||||||||||||
seq2  ACCCACCCACTCCCACTTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCA  148

seq1  TATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTA  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTA  198

seq1  GGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTG  242
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  GGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCAGGGTACTG  248

seq1  GTTAGCTCATAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTC  292
      |||||  ||||| ||||||| | ||||||||||| |||||||||||||||
seq2  GTTAGTACATAATGTTGTTCTAACTATAGGGTTGTAGATCCCTTTAGCTC  298

seq1  CTTGGCTACTTTCTCTA  309
      ||||       ||||||
seq2  CTTG-------TCTCTA  308

seq1: chr16_37704413_37705549
seq2: B6Ng01-047K14.g_68_1185 (reverse)

seq1  ATGCTTTCATA-ATCCAAAAAAAGGCAAAAAAAGAGAAAAAAATGAACCA  49
      ||||||||  | |||| |||||||||||||    ||| ||||||||||| 
seq2  ATGCTTTCTCATATCC-AAAAAAGGCAAAA----AGAGAAAAATGAACC-  44

seq1  CACCCAGGAGCAAGATGTTGTGCTTAACTGGATCCTTAATCACTTTAAAC  99
      ||||||| ||||||||||   |||  ||||||||||  |||||||  |||
seq2  CACCCAGAAGCAAGATGTGTGGCT--ACTGGATCCT--ATCACTT--AAC  88

seq1  ATATCTGCAATCCAATGTAAAGACAAAAATCTGTCATCCTGATTTAAAAG  149
      ||||||||||| |||||||||||| |||||||||||| ||||||  ||||
seq2  ATATCTGCAAT-CAATGTAAAGAC-AAAATCTGTCAT-CTGATT--AAAG  133

seq1  TAAGATCCACCTATATGTGTCTCTCCAGTTACACATAACCGAAAGGTTAA  199
      |||||||||||||||| ||||||||||||||||||||||||||  | |||
seq2  TAAGATCCACCTATAT-TGTCTCTCCAGTTACACATAACCGAA--GGTAA  180

seq1  AAATAAAAGGCTGATTTTCCAGTACAGATAACGACATAATTTGGCATGGT  249
      ||||||||| ||||||||||||||||||||||||||| ||||||||||||
seq2  AAATAAAAGACTGATTTTCCAGTACAGATAACGACAT-ATTTGGCATGGT  229

seq1  ACAA-TTAATATCAGCTGAAGTAGACATTGAGGTAAGACAGCTTCCTAGA  298
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTAATATCAGCTGAAGTAGACATTGAGGTAAGACAGCTTCCTAGA  279

seq1  GATGAAAAGAGACATCTCATAATCATGGAAATATATTTAAAATATCATTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAAGAGACATCTCATAATCATGGAAATATATTTAAAATATCATTC  329

seq1  CTACCATCCTTTCTCATGTTAAGTACTGTAATTATCTAATAATAGAATGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATCCTTTCTCATGTTAAGTACTGTAATTATCTAATAATAGAATGC  379

seq1  CAACCTTCTGGAAATATGATGGTTCCAAAATGTCTTGTCACTCAAATTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTCTGGAAATATGATGGTTCCAAAATGTCTTGTCACTCAAATTTA  429

seq1  GAAGCACGACAAAATGGATCTTTAAAAAAAAATCATTGCCTGTTTATACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACGACAAAATGGATCTTTAAAAAAAAATCATTGCCTGTTTATACA  479

seq1  TGGCATTAGACTTCCCAGAGAGACACTCCTGACAACGTTAGGACTATTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTAGACTTCCCAGAGAGACACTCCTGACAACGTTAGGACTATTGT  529

seq1  TTGCTGATCATCAGAGGTTGTATTCCTTCTGATATAATTAATACGTGAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGATCATCAGAGGTTGTATTCCTTCTGATATAATTAATACGTGAAC  579

seq1  AAATACTCTTCCGATCTGTCCTGTTTAATATGTAGCTTCTAGTTCCTCCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTCTTCCGATCTGTCCTGTTTAATATGTAGCTTCTAGTTCCTCCT  629

seq1  CATTGTCCTGACAGCTTTTGTGATGAGTCACGCAGAAAGCAGGATTTAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCCTGACAGCTTTTGTGATGAGTCACGCAGAAAGCAGGATTTAGC  679

seq1  TGGCTCTGCCAAAGTAGACTTGTCTCACTAGCTGTATGAGATAGTTCAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTGCCAAAGTAGACTTGTCTCACTAGCTGTATGAGATAGTTCAGG  729

seq1  GGCGGCGGCTGTGTCTTGGTAGGAATTCAGCCTTTTAAAAGATAACCTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGCGGCTGTGTCTTGGTAGGAATTCAGCCTTTTAAAAGATAACCTTA  779

seq1  CTGTTGATTTGTGTTCAGCTTTTTTTCCCCTCTGTGCATCCATCCTGTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGATTTGTGTTCAGCTTTTTTTCCCCTCTGTGCATCCATCCTGTAA  829

seq1  TATATCCTTAAATAGAAAGTAATGAAAGTAAAGCTATAGAATGTTATACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCTTAAATAGAAAGTAATGAAAGTAAAGCTATAGAATGTTATACA  879

seq1  AATGTCAGCTTGTTACTTTTTTTTTCCTCAGCTCTGAATGTCATCTTTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGCTTGTTACTTTTTTTTTCCTCAGCTCTGAATGTCATCTTTCA  929

seq1  GGAAACACATATGGCCCAGTGGCGTGCTTCTGGTCCTAAAACCCTCTTCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACATATGGCCCAGTGGCGTGCTTCTGGTCCTAAAACCCTCTTCT  979

seq1  CTCAGTGAGCAGGAAGTAGAGACCGAGACACTCCCAACACTGAACCAAGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGAGCAGGAAGTAGAGACCGAGACACTCCCAACACTGAACCAAGC  1029

seq1  ACTATCTGCATGGAACCCTGAAGGAGAATCGGGACATGTCTGTTTTTCAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTGCATGGAACCCTGAAGGAGAATCGGGACATGTCTGTTTTTCAA  1079

seq1  CAATTTTACTTAAATTAGTAACAATGTGGAGGAGAATTC  1137
      |||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTACTTAAATTAGTAACAATGTGGAGGAGAATTC  1118