BAC Information

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BAC

Clone NameB6Ng01-047P03
ChromosomeY (Build37)15 (Build37)
Map Location 1,120,588 - 1,120,94143,535,477 - 43,536,295
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047P03.bB6Ng01-047P03.g
ACCDH872665DH872666
length863819
definitionDH872665|Mus musculus domesticus DNA, BAC clone: B6Ng01-047P03, 5' end.DH872666|Mus musculus domesticus DNA, BAC clone: B6Ng01-047P03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,588 - 1,120,941)(43,535,477 - 43,536,295)
sequence
gaattctcttccacgaggtgttacagctctataagacagacactctcaga
caatctttgatgaaataagttgtgcattttatttctttttgacagggtct
tatatatattttggggtgggttgcgatctaaaagcagatactttcttttt
ttaatatttttaattaggtattttcctcaattacatttccaatgctatcc
caaaagtcccccatacctaaccccccccactcccttacccacctactccc
actttttggccctggcgttcccctgtactggggcatataaagtttgcaag
tccaatgggcctcactttccactgatggccaactaggccatcatttgata
catatgcagctagagtcaagagctccgaggtactggttagttcataatgt
tgttgcacctatagggttgcagaaccctttagctccttggatacgttctc
tagctcctccattgggggccctgtgatccatccaatagctgactgtgagc
acatccacttatgtgtttgctaggctccggcatagtctcacaagagacag
ctatatcagggtccttccagcaaaatcttgctagtgtatgcaatggtgtt
atcgtttggaggctgattatgggatggatccctggatatggcaacctcta
tatgctccatccttttgtctcagctccaaaccttgtctctgtaactcctt
ccatgggtgttttgttcccaattctaagaagggcaaagtgcccacacttt
ggtcttcgttcttcttcagtttcatgtgttttgcaaattgtatcttatat
ctcgggtatactaagtttctgggctaatatccacttatcagtgagtacat
attgtgtgagttc
gaattctatggaccttcggaggcaagggcaaaagacagagaaataacaaa
actcaacattggtggaataaatgatcccattacaagcatgtacaatcttt
aaaccctgatatttaatatgttctacactctggtgagtatagttattact
ttttttttcctgagtgatgtcaaatatagtgacacacaatctaagtagta
gataattgcaaaatacattttaaaaggtaaatagacccagagggaggatt
tgagagacagagacttagtctgcttagagaaagagcagaagtagtagtga
agagtgagaaaagaggaaacattgtaagagacagaggacacactagtatg
taaatatgaataaaagaaagccacaacataaagatcaggagtcctggaaa
aaagattgcactgttttcattatttacccctcttgtcaattcccctattt
attaggcacaaatttctagagaaaatgaattacagtggggaaggccaggt
tgagagaccctagaatccataactgccttcttccatggtgataaacacat
tctgttgcagaaacagggtcatttgcatgtaaaaataataatttcattat
gtaagtaatatatatgtatatatgtgtatgtatgtatgtgtgtgaatatt
agtatattcatatatatacatatgtgttcatatatattagtatattcata
ttataatgaatatattcatattatatatgaatattagtatattcatataa
cataatgtatatgtatatatatatatatatatatgaatgaattaatctta
tgcactcccccacagtcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120588_1120941
seq2: B6Ng01-047P03.b_192_546

seq1  -TTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGC  49
       ||||||   |||||| |||||||||||  |||| |||||||||||||||
seq2  TTTTTTTAATATTTTTAATTAGGTATTTTCCTCAATTACATTTCCAATGC  50

seq1  TATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCA  99
      ||| |||||||||||||||| | | || ||||||||||| | |||||| |
seq2  TATCCCAAAAGTCCCCCATACCTAACCCCCCCCACTCCCTTACCCACCTA  100

seq1  CTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTT  149
      ||||| ||||||||||||||  ||||||||||||||||||||||||||||
seq2  CTCCCACTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTT  150

seq1  GCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTT  199
      |||||||||||||||||| ||||||| |||||||| ||||||||||| ||
seq2  GCAAGTCCAATGGGCCTCACTTTCCACTGATGGCCAACTAGGCCATCATT  200

seq1  TGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCAT  249
      ||||| |||||||||||||||||||||||||| |||||||||||| ||||
seq2  TGATACATATGCAGCTAGAGTCAAGAGCTCCGAGGTACTGGTTAGTTCAT  250

seq1  AACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTACT  299
      || |||||| |||||||||||||| ||| |||||||||||||||| ||| 
seq2  AATGTTGTTGCACCTATAGGGTTGCAGAACCCTTTAGCTCCTTGGATACG  300

seq1  TTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACTG  349
      ||||||||||||||||||||| ||||| ||||||||||| ||||||||||
seq2  TTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTG  350

seq1  TGAGC  354
      |||||
seq2  TGAGC  355

seq1: chr15_43535477_43536295
seq2: B6Ng01-047P03.g_66_884

seq1  GAATTCTATGGACCTTCGGAGGCAAGGGCAAAAGACAGAGAAATAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGGACCTTCGGAGGCAAGGGCAAAAGACAGAGAAATAACAAA  50

seq1  ACTCAACATTGGTGGAATAAATGATCCCATTACAAGCATGTACAATCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACATTGGTGGAATAAATGATCCCATTACAAGCATGTACAATCTTT  100

seq1  AAACCCTGATATTTAATATGTTCTACACTCTGGTGAGTATAGTTATTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGATATTTAATATGTTCTACACTCTGGTGAGTATAGTTATTACT  150

seq1  TTTTTTTTCCTGAGTGATGTCAAATATAGTGACACACAATCTAAGTAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCCTGAGTGATGTCAAATATAGTGACACACAATCTAAGTAGTA  200

seq1  GATAATTGCAAAATACATTTTAAAAGGTAAATAGACCCAGAGGGAGGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTGCAAAATACATTTTAAAAGGTAAATAGACCCAGAGGGAGGATT  250

seq1  TGAGAGACAGAGACTTAGTCTGCTTAGAGAAAGAGCAGAAGTAGTAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGACAGAGACTTAGTCTGCTTAGAGAAAGAGCAGAAGTAGTAGTGA  300

seq1  AGAGTGAGAAAAGAGGAAACATTGTAAGAGACAGAGGACACACTAGTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGAAAAGAGGAAACATTGTAAGAGACAGAGGACACACTAGTATG  350

seq1  TAAATATGAATAAAAGAAAGCCACAACATAAAGATCAGGAGTCCTGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGAATAAAAGAAAGCCACAACATAAAGATCAGGAGTCCTGGAAA  400

seq1  AAAGATTGCACTGTTTTCATTATTTACCCCTCTTGTCAATTCCCCTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTGCACTGTTTTCATTATTTACCCCTCTTGTCAATTCCCCTATTT  450

seq1  ATTAGGCACAAATTTCTAGAGAAAATGAATTACAGTGGGGAAGGCCAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGCACAAATTTCTAGAGAAAATGAATTACAGTGGGGAAGGCCAGGT  500

seq1  TGAGAGACCCTAGAATCCATAACTGCCTTCTTCCATGGTGATAAACACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGACCCTAGAATCCATAACTGCCTTCTTCCATGGTGATAAACACAT  550

seq1  TCTGTTGCAGAAACAGGGTCATTTGCATGTAAAAATAATAATTTCATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGCAGAAACAGGGTCATTTGCATGTAAAAATAATAATTTCATTAT  600

seq1  GTAAGTAATATATATGTATATATGTGTATGTATGTATGTGTGTGAATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTAATATATATGTATATATGTGTATGTATGTATGTGTGTGAATATT  650

seq1  AGTATATTCATATATATACATATGTGTTCATATATATTAGTATATTCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATTCATATATATACATATGTGTTCATATATATTAGTATATTCATA  700

seq1  TTATTATGAATATATTCATATTATATATGAATATTAGTATATTCATATAT  750
      |||| |||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTATAATGAATATATTCATATTATATATGAATATTAGTATATTCATATA-  749

seq1  ACAT-ATGTATATGTATATATATATATATATATATGAATGAATTAATCAT  799
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACATAATGTATATGTATATATATATATATATATATGAATGAATTAATC-T  798

seq1  TATGCAC-ACACCACAGTCAC  819
      |||||||  | ||||||||||
seq2  TATGCACTCCCCCACAGTCAC  819