BAC Information

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BAC

Clone NameB6Ng01-049N08
ChromosomeY (Build37)1 (Build37)
Map Location 573,321 - 573,482117,481,318 - 117,482,344
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049N08.bB6Ng01-049N08.g
ACCDH873975DH873976
length4941,001
definitionDH873975|Mus musculus domesticus DNA, BAC clone: B6Ng01-049N08, 5' end.DH873976|Mus musculus domesticus DNA, BAC clone: B6Ng01-049N08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,482)(117,481,318 - 117,482,344)
sequence
tttatttagctctgagtcccatttttaatggcgttatttgattttctgga
atccacttcaccccttcttagaattgggaacaaaacacccatggacgtag
ttacagagacaaagtttagagctgagatgaaaggatggaccatctagaga
ctgccatacccagagactcatcccataatcagcctccaaatgctgtcacc
attgcatacactagcaagatttagctgaaaggacccagatatagctgtcc
cttgtgagggtatgctagagcctggcaaacacaaaagtggatgctcatgg
tcagctattggttggaacacagggcccccaatggtggagctagagaaagt
acccaaggagctaaaggggtctgcaaccctataggtggaacaacaatatg
aactaaccagtacccaccagagctcgtttcattagctgcatatgtatcag
aagatgccctaatcggccatcattgggaagagaggccccttggt
gaattcacagcttctaagactcctcaatctgtgatttatagtttccaatg
tatatggcatcaaattagattcaaatactttcatcatttacaaaatacgt
tctgtatcatcactactttttcatatgtctgcttgtatatgtgtttatat
atgtgtatgtttataaacataattcataaatatgtttataagtaaagtgt
aaaacctgcttaccaacatttggtatgccaacaactatatgacaacagca
aaaaacagcacttaggaaaacaatcctgtttatttaatctgctgactaac
ctgagaatatgtataaccaaaggggtgaaatatatccacgatgaggatta
taaagcatttggaaatgtaattgaggacacaaaataaagtaaaaataccc
aaattcatgaatggaaaaataattttgtcaaaatattcatataaccaaag
acatgtacatattccctgaatctttatcaaagtgggaaacaaactttagt
tgagaacacttacttgaaactcacacagaactttaaagtttaaagttggt
gcagggctggatccagaggaatgaatggatgaaatgagagatttatagta
agaagacaaatcaaataggtcacaacaatccactgaaccatgttgacata
aagccatgaacaaagacatgagttctttgcatcttggtctcttggtacaa
acatgtgatagccagagggtaacttcctggtgcctactgtagtctagcat
cttgactcctcttcttgtagctcagtgcaagtgctgtattaagaacctga
gacttacacatattacctaatagctaaacagagaagaaatgggccatgac
taaataacaaatgtgactttagctgactgacttatcctcatcatcatgac
tgagatgaagctagtagtaaatacatatttcatgggtatttctcttcgac
tagaacttctgcatatgcactgtctgaccatcagttgtcatatcagttca
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573482
seq2: B6Ng01-049N08.b_378_541

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      |||| ||||||||||||||||||||||||||||||||| ||||||| |||
seq2  ATGGTGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCTGCAACCCT  50

seq1  ATAGATGGAACAACAATATGAA-TAACCAGTATCCA-CAGAGCTCATGTC  98
      |||| ||||||||||||||||| ||||||||| ||| |||||||| | ||
seq2  ATAGGTGGAACAACAATATGAACTAACCAGTACCCACCAGAGCTCGTTTC  100

seq1  TCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAAG  148
        |||||||||||||||||||||||| |||| | ||||||||||||||||
seq2  ATTAGCTGCATATGTATCAGAAGATGCCCTAATCGGCCATCATTGGGAAG  150

seq1  AGAGGCCCCTTGGT  162
      ||||||||||||||
seq2  AGAGGCCCCTTGGT  164

seq1: chr1_117481318_117482344
seq2: B6Ng01-049N08.g_66_1066 (reverse)

seq1  TTGAACCCTGATATGACAACCTTGAATGTGTCAGACAAGTGCATATGCAG  50
      |||||  |||||||||||||  || ||| ||||||| |||||||||||||
seq2  TTGAA--CTGATATGACAAC--TG-ATG-GTCAGAC-AGTGCATATGCAG  43

seq1  AAGTTTCCTAGTCGAAAGAGAAAATACCCATGAAATATGTATTTTAACTT  100
      |||||  ||||||| ||||| |||||||||||||||||||||||  || |
seq2  AAGTT--CTAGTCG-AAGAG-AAATACCCATGAAATATGTATTT--AC-T  86

seq1  ACTAGGCTTTCATCTCAGGTCATGATGATGAGGAATAAGTCAGTCAGCCT  150
      |||||   ||||||||| ||||||||||||||| ||||||||||||||  
seq2  ACTAG--CTTCATCTCA-GTCATGATGATGAGG-ATAAGTCAGTCAGC--  130

seq1  TAAAGGTCACCATTTTTGTTATTTAGTCATGGCCCATTTCCTTCTCTGTT  200
      |||| |||||    ||||||||||||||||||||||||| ||||||||||
seq2  TAAA-GTCAC---ATTTGTTATTTAGTCATGGCCCATTT-CTTCTCTGTT  175

seq1  TAGCTATTAGGTAATATGTGTAAGTCTCAGGTTCTTAATACAGCACTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATTAGGTAATATGTGTAAGTCTCAGGTTCTTAATACAGCACTTGC  225

seq1  ACCTGAGCTACAAGAAGAGGAGTCAAGATGCTAGACTACAGTAGGCACCA  300
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-CTGAGCTACAAGAAGAGGAGTCAAGATGCTAGACTACAGTAGGCACCA  274

seq1  GGAAGTTACCCTCTGGCTATCACATGTTTGTACCAAGAGACCAAGATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTACCCTCTGGCTATCACATGTTTGTACCAAGAGACCAAGATGCA  324

seq1  AAGAACTCATGTCTTTGTTCATGGCTTTATGTCAACATGGTTCAGTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTCATGTCTTTGTTCATGGCTTTATGTCAACATGGTTCAGTGGAT  374

seq1  TGTTGTGACCTATTTGATTTGTCTTCTTACTATAAATCTCTCATTTCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGACCTATTTGATTTGTCTTCTTACTATAAATCTCTCATTTCATC  424

seq1  CATTCATTCCTCTGGATCCAGCCCTGCACCAACTTTAAACTTTAAAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTCCTCTGGATCCAGCCCTGCACCAACTTTAAACTTTAAAGTTC  474

seq1  TGTGTGAGTTTCAAGTAAGTGTTCTCAACTAAAGTTTGTTTCCCACTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGTTTCAAGTAAGTGTTCTCAACTAAAGTTTGTTTCCCACTTTG  524

seq1  ATAAAGATTCAGGGAATATGTACATGTCTTTGGTTATATGAATATTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATTCAGGGAATATGTACATGTCTTTGGTTATATGAATATTTTGA  574

seq1  CAAAATTATTTTTCCATTCATGAATTTGGGTATTTTTACTTTATTTTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTATTTTTCCATTCATGAATTTGGGTATTTTTACTTTATTTTGTG  624

seq1  TCCTCAATTACATTTCCAAATGCTTTATAATCCTCATCGTGGATATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAATTACATTTCCAAATGCTTTATAATCCTCATCGTGGATATATTT  674

seq1  CACCCCTTTGGTTATACATATTCTCAGGTTAGTCAGCAGATTAAATAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTTTGGTTATACATATTCTCAGGTTAGTCAGCAGATTAAATAAAC  724

seq1  AGGATTGTTTTCCTAAGTGCTGTTTTTTGCTGTTGTCATATAGTTGTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGTTTTCCTAAGTGCTGTTTTTTGCTGTTGTCATATAGTTGTTGG  774

seq1  CATACCAAATGTTGGTAAGCAGGTTTTACACTTTACTTATAAACATATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCAAATGTTGGTAAGCAGGTTTTACACTTTACTTATAAACATATTT  824

seq1  ATGAATTATGTTTATAAACATACACATATATAAACACATATACAAGCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTATGTTTATAAACATACACATATATAAACACATATACAAGCAGA  874

seq1  CATATGAAAAAGTAGTGATGATACAGAACGTATTTTGTAAATGATGAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGAAAAAGTAGTGATGATACAGAACGTATTTTGTAAATGATGAAAG  924

seq1  TATTTGAATCTAATTTGATGCCATATACATTGGAAACTATAAATCACAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAATCTAATTTGATGCCATATACATTGGAAACTATAAATCACAGA  974

seq1  TTGAGGAGTCTTAGAAGCTGTGAATTC  1027
      |||||||||||||||||||||||||||
seq2  TTGAGGAGTCTTAGAAGCTGTGAATTC  1001