BAC Information

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BAC

Clone NameB6Ng01-052F05
ChromosomeY (Build37)16 (Build37)
Map Location 573,820 - 573,87016,311,545 - 16,312,323
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052F05.bB6Ng01-052F05.g
ACCDH875713DH875714
length957779
definitionDH875713|Mus musculus domesticus DNA, BAC clone: B6Ng01-052F05, 5' end.DH875714|Mus musculus domesticus DNA, BAC clone: B6Ng01-052F05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,820 - 573,870)(16,311,545 - 16,312,323)
sequence
gaattcaaagaagatcgcagaagatggaaagatctcccatgcccatggat
tggcaggattaatataataaaaatggccatcttgccaaaagcaatctaca
gattcaatgcaatccccatcaaaattccaactcaattcttcactgagcta
gaaagggcaatttacaaattcatctggaataacaaaaaacctaagatagt
gaaaactattctcaacaataaaagaacttctggtggaatcaccatccctg
acctcaagctgtgctatagagtaattgtgattaaaaactgcatggtatta
gtactgtgacaggcaggtagatcaatggaatagaattgaagactcagaaa
tgaatccacacacctatggtcacttgatctttgacaaaggagttaaaaac
atccagtggaaaaaaagacagcattttcttttcttttcttttcttttctt
ttttcttttactttttttggttttttgagacagggtttctctgtatagcc
ctggctgtcctggaactcactttgtagaccaggctggcctcgaactcaga
aatctgcctgcctctgtctcctgagtgctgggattaaaggcgtgcatccc
acgcccggctcaacattttcaacaaatgctgctgcaccatctatctgtta
gcctgtagaagaatgtgacatgatccatttctatctccttctacaaagct
caagtccagttgaatcaagaacctccacataaaaccagatagactgaaag
taatagaaaagaaagtggggaaagagcctcaaggacatgaacacggggga
aaatttcctgaacagaacacctacagcttatgctctaagatcaagaattg
acaaatggggacctcataaattgcaaagcttctgtaagacaaatgacact
atcataggacaaaatgtcaccacagattgggaaagatctttaccaccctg
catcagt
gaattctttctgatgtgcttcaagaaaaggtataaatagctgtatctttc
aaatatctgaatctacttcataatgtgacaatttaaattgcactgcacca
aaagttttacaccatttctcctattagataatcacacccaaggccttgtt
acatctccatgtctacagatgaagatggaaactccttccaagtaacccaa
ggatgagtgctcagaatgtgagcactacacttttctgcaaggcatccaga
agccgatcaacagtttatgcttcaccctgtgtacactgggatggcgctat
cttgatttttatagaaaccgttttggagaattaacttgcctcgtgtatac
aaacctgaactagtttgacctcaaaacttcctatatctttgctattctta
atgatggtatacttggtgagatgctttttgtttcttaaatttaatttctt
aaaatatctgctgtaccagatgctctcagccaaccattggactgagtgtg
tggtccctgatggaggagttggagaagggactgaaggagctgaaggggtt
tgcagccccatgaagtaagcaacgtgtcaactggccagacacccagagct
cctggggactggaccaccaaccaaagagtatacacatggagggagccatg
actctggctgcatatgtggtagaggatggtattgttggacatcagtggag
aggagaggcccttggacccgagggggtttgatgccccagtgtaggggaat
gccagggcgggaagggggtgtgggggggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573820_573870
seq2: B6Ng01-052F05.b_488_544

seq1  -----TTTTTTTTTTT--TTTTTTTGGTGTTTTCGAGATAGGGTTTCTCT  43
           |||||| ||||  |||||||||| |||| |||| |||||||||||
seq2  TTTTCTTTTTTCTTTTACTTTTTTTGGT-TTTTTGAGACAGGGTTTCTCT  49

seq1  GTATAGCC  51
      ||||||||
seq2  GTATAGCC  57

seq1: chr16_16311545_16312323
seq2: B6Ng01-052F05.g_68_846 (reverse)

seq1  GCCCCCCCACACCCCCTTCCCGCCCTGGCATTCCCCTACACTGGGGCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCCCACACCCCCTTCCCGCCCTGGCATTCCCCTACACTGGGGCATC  50

seq1  AAACCCCCTCGGGTCCAAGGGCCTCTCCTCTCCACTGATGTCCAACAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCCTCGGGTCCAAGGGCCTCTCCTCTCCACTGATGTCCAACAATA  100

seq1  CCATCCTCTACCACATATGCAGCCAGAGTCATGGCTCCCTCCATGTGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTCTACCACATATGCAGCCAGAGTCATGGCTCCCTCCATGTGTAT  150

seq1  ACTCTTTGGTTGGTGGTCCAGTCCCCAGGAGCTCTGGGTGTCTGGCCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTGGTTGGTGGTCCAGTCCCCAGGAGCTCTGGGTGTCTGGCCAGT  200

seq1  TGACACGTTGCTTACTTCATGGGGCTGCAAACCCCTTCAGCTCCTTCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACGTTGCTTACTTCATGGGGCTGCAAACCCCTTCAGCTCCTTCAGT  250

seq1  CCCTTCTCCAACTCCTCCATCAGGGACCACACACTCAGTCCAATGGTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTCCAACTCCTCCATCAGGGACCACACACTCAGTCCAATGGTTGG  300

seq1  CTGAGAGCATCTGGTACAGCAGATATTTTAAGAAATTAAATTTAAGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGCATCTGGTACAGCAGATATTTTAAGAAATTAAATTTAAGAAAC  350

seq1  AAAAAGCATCTCACCAAGTATACCATCATTAAGAATAGCAAAGATATAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCATCTCACCAAGTATACCATCATTAAGAATAGCAAAGATATAGG  400

seq1  AAGTTTTGAGGTCAAACTAGTTCAGGTTTGTATACACGAGGCAAGTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTGAGGTCAAACTAGTTCAGGTTTGTATACACGAGGCAAGTTAAT  450

seq1  TCTCCAAAACGGTTTCTATAAAAATCAAGATAGCGCCATCCCAGTGTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAAACGGTTTCTATAAAAATCAAGATAGCGCCATCCCAGTGTACA  500

seq1  CAGGGTGAAGCATAAACTGTTGATCGGCTTCTGGATGCCTTGCAGAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGAAGCATAAACTGTTGATCGGCTTCTGGATGCCTTGCAGAAAAG  550

seq1  TGTAGTGCTCACATTCTGAGCACTCATCCTTGGGTTACTTGGAAGGAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGCTCACATTCTGAGCACTCATCCTTGGGTTACTTGGAAGGAGTT  600

seq1  TCCATCTTCATCTGTAGACATGGAGATGTAACAAGGCCTTGGGTGTGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTCATCTGTAGACATGGAGATGTAACAAGGCCTTGGGTGTGATT  650

seq1  ATCTAATAGGAGAAATGGTGTAAAACTTTTGGTGCAGTGCAATTTAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATAGGAGAAATGGTGTAAAACTTTTGGTGCAGTGCAATTTAAATT  700

seq1  GTCACATTATGAAGTAGATTCAGATATTTGAAAGATACAGCTATTTATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATTATGAAGTAGATTCAGATATTTGAAAGATACAGCTATTTATAC  750

seq1  CTTTTCTTGAAGCACATCAGAAAGAATTC  779
      |||||||||||||||||||||||||||||
seq2  CTTTTCTTGAAGCACATCAGAAAGAATTC  779