BAC Information

Click to search

BAC

Clone NameB6Ng01-055I20
Chromosome5 (Build37)Y (Build37)
Map Location 80,476,393 - 80,477,554573,321 - 573,567
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384, Lphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055I20.bB6Ng01-055I20.g
ACCDH877966DH877967
length1,128434
definitionDH877966|Mus musculus domesticus DNA, BAC clone: B6Ng01-055I20, 5' end.DH877967|Mus musculus domesticus DNA, BAC clone: B6Ng01-055I20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,476,393 - 80,477,554)(573,321 - 573,567)
sequence
gaattccaagtatagttaatatacatataaaaatatgtctacacacggca
aaataagttgttttaagaacttaaaagatcataaaacttgcaatacagga
agcctttagtagtcttcagcactttatgattgattatttaaataaatatt
taaagtgtataactacattaaaaagagagacattttcatgacttttttat
ttcaaattgtatgcctaaagttatctattcatggtatgtgcataaattac
aatttctaaatacttgaaagggaaatgaatggatcttgaaagaaataaaa
tgtcttggaacacttagggatataattttctaaacttattcatatttttt
agtatatgtggaacatgaatatattttaacgtgcaaaagatgtaaaatga
tccgtgttgaaaacactcatattctacatcattgactctctatcatttat
ctactcacacaatcttcttcccagtaactattagctgaccttttttttcg
ttcttgttctcaacaaacccatatgctcacttgttcaaactgagtgtcaa
actcagttcatattacctaagtttgaatctaggtttatctctcagtagat
gaatgtctttaaattgatctataacactcatccctggttgtaaaataatt
ttgtacattttgcttgcatccttagtttttttccatgcatacaaatacat
tagaatacattctttatgtcctgtcttgtatgtacaatcttccagacctt
tgttatctacctatagctagcaccatctctctgtattgcattatgcacat
ttcatatgttggatggagaggtcatgagtttagtgaatcttctagttggt
gagtgtttcagataacactctgtaccataccaattgagtgcttagtcaac
aaatgaaaatgcttgtctctggatatctgtaaacattttgtacttagata
attcagcactggttacattcaggtctattcaaaggctacctaatgctgct
attcttcagaataggatagatttgctgagaaaatattgatatatatataa
cggatttaaaataggctgatacggtatggatgaattatcatgatgacagc
tcaccgcaagctaaggtaataagaggac
tttgcgaaaggatggaacatctagaggatgccatatccggggatccgtcc
cataatcagcttccaaacgctgacactattgcagacactagcaagatttt
gctgaaaggacccagatatggctgtctcttgtgagactatgccagggact
ggcaaacacagaagtggatgctcacagtcagctattggatgggtcacacg
gccccaatggaggagctagagaaagtatccaaggagctaaagggatctgc
aaccttataggtggaacaacaatatgaactaactaccccaccccccaccc
cccggagctcatgtctctaactgcatatgaatcagaagatggcctagttg
gccatcagtggaaagagcaaactttatatgcctcagtacaggggaatgct
agggccaagaagtgggagtgggtgggtgggggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_80476393_80477554
seq2: B6Ng01-055I20.b_49_1176 (reverse)

seq1  GTCCTCTTTTATGTACCTTAGCCTTTGCGGTTGAGCCTGCTCAATCACTG  50
      |||||||| |   |||||||||  |||||| |||| ||| || ||||   
seq2  GTCCTCTTAT---TACCTTAGC--TTGCGG-TGAG-CTG-TC-ATCA--T  39

seq1  GATAAATTTCAATCCCATAACGTTATTCAGCTTATTGTTTAAAATCTGTT  100
      |||||  ||||   ||||| |||   ||||| ||   ||| ||||| | |
seq2  GATAA--TTCA--TCCATACCGT--ATCAGCCTA---TTTTAAATCCG-T  79

seq1  TATATATATATCAATATTTTCTCAGCAAAATCTAATCCTATTTCTGAAAG  150
      |||||||||||||||||||||||||| |||||| |||||| ||||| |||
seq2  TATATATATATCAATATTTTCTCAGC-AAATCT-ATCCTA-TTCTG-AAG  125

seq1  AATAGCAGCATTAGGTAGCCTTTGGAATTAGAACCTTGAATGTAACCAGT  200
      ||||||||||||||||||||||||  | ||||  | ||||||||||||||
seq2  AATAGCAGCATTAGGTAGCCTTTG--AATAGA--CCTGAATGTAACCAGT  171

seq1  GCTTGAATTTATCTAAGTACAAAATGTTTTACAGAATATCCAGAGACAAG  250
      || |||| |||||||||||||||||| ||||||| |||||||||||||||
seq2  GC-TGAA-TTATCTAAGTACAAAATG-TTTACAG-ATATCCAGAGACAAG  217

seq1  CATTTTTCATTTGTTGACTAAGCACTCAATTGGTATGGTACAGAGTGTTA  300
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-TTTTCATTTGTTGACTAAGCACTCAATTGGTATGGTACAGAGTGTTA  266

seq1  TCTGAAACACTCACCAACTAGAAGATTCACTAAACTCATGACCTCTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAACACTCACCAACTAGAAGATTCACTAAACTCATGACCTCTCCAT  316

seq1  CCAACATATGAAATGTGCATAATGCAATACAGAGAGATGGTGCTAGCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATATGAAATGTGCATAATGCAATACAGAGAGATGGTGCTAGCTAT  366

seq1  AGGTAGATAACAAAGGTCTGGAAGATTGTACATACAAGACAGGACATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGATAACAAAGGTCTGGAAGATTGTACATACAAGACAGGACATAAA  416

seq1  GAATGTATTCTAATGTATTTGTATGCATGGAAAAAAACTAAGGATGCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTATTCTAATGTATTTGTATGCATGGAAAAAAACTAAGGATGCAAG  466

seq1  CAAAATGTACAAAATTATTTTACAACCAGGGATGAGTGTTATAGATCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTACAAAATTATTTTACAACCAGGGATGAGTGTTATAGATCAAT  516

seq1  TTAAAGACATTCATCTACTGAGAGATAAACCTAGATTCAAACTTAGGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGACATTCATCTACTGAGAGATAAACCTAGATTCAAACTTAGGTAA  566

seq1  TATGAACTGAGTTTGACACTCAGTTTGAACAAGTGAGCATATGGGTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACTGAGTTTGACACTCAGTTTGAACAAGTGAGCATATGGGTTTGT  616

seq1  TGAGAACAAGAACGAAAAAAAAGGTCAGCTAATAGTTACTGGGAAGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACAAGAACGAAAAAAAAGGTCAGCTAATAGTTACTGGGAAGAAGA  666

seq1  TTGTGTGAGTAGATAAATGATAGAGAGTCAATGATGTAGAATATGAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGAGTAGATAAATGATAGAGAGTCAATGATGTAGAATATGAGTGT  716

seq1  TTTCAACACGGATCATTTTACATCTTTTGCACGTTAAAATATATTCATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACACGGATCATTTTACATCTTTTGCACGTTAAAATATATTCATGT  766

seq1  TCCACATATACTAAAAAATATGAATAAGTTTAGAAAATTATATCCCTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATATACTAAAAAATATGAATAAGTTTAGAAAATTATATCCCTAAG  816

seq1  TGTTCCAAGACATTTTATTTCTTTCAAGATCCATTCATTTCCCTTTCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAAGACATTTTATTTCTTTCAAGATCCATTCATTTCCCTTTCAAG  866

seq1  TATTTAGAAATTGTAATTTATGCACATACCATGAATAGATAACTTTAGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGAAATTGTAATTTATGCACATACCATGAATAGATAACTTTAGGC  916

seq1  ATACAATTTGAAATAAAAAAGTCATGAAAATGTCTCTCTTTTTAATGTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATTTGAAATAAAAAAGTCATGAAAATGTCTCTCTTTTTAATGTAG  966

seq1  TTATACACTTTAAATATTTATTTAAATAATCAATCATAAAGTGCTGAAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACACTTTAAATATTTATTTAAATAATCAATCATAAAGTGCTGAAGA  1016

seq1  CTACTAAAGGCTTCCTGTATTGCAAGTTTTATGATCTTTTAAGTTCTTAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAAAGGCTTCCTGTATTGCAAGTTTTATGATCTTTTAAGTTCTTAA  1066

seq1  AACAACTTATTTTGCCGTGTGTAGACATATTTTTATATGTATATTAACTA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTTATTTTGCCGTGTGTAGACATATTTTTATATGTATATTAACTA  1116

seq1  TACTTGGAATTC  1162
      ||||||||||||
seq2  TACTTGGAATTC  1128

seq1: chrY_573321_573567
seq2: B6Ng01-055I20.g_280_507

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      ||||||||||||||||||||| |||||||||||||||||||||||| | |
seq2  ATGGAGGAGCTAGAGAAAGTATCCAAGGAGCTAAAGGGATCTGCAACCTT  50

seq1  ATAGATGGAACAACAATATGAA-TAA-----CCAGTATCCA-----CAGA  89
      |||| ||||||||||||||||| |||     |||    |||     | ||
seq2  ATAGGTGGAACAACAATATGAACTAACTACCCCACCCCCCACCCCCCGGA  100

seq1  GCTCATGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATC  139
      ||||||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  GCTCATGTCTCTAACTGCATATGAATCAGAAGATGGCCTAGTTGGCCATC  150

seq1  ATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACA  189
      | ||| ||||                |||||||||||||||| |||||||
seq2  AGTGGAAAGA----------------GCAAACTTTATATGCCTCAGTACA  184

seq1  GGGGAACACCAGGGCCAAGAAGTGGGAGAAGGTGGGTAGGGTAGCAAGGC  239
      ||||||  | ||||||||||||||||||  ||||||| ||| ||      
seq2  GGGGAATGCTAGGGCCAAGAAGTGGGAGTGGGTGGGTGGGGGAG------  228

seq1  AGGGGGAG  247
              
seq2  --------  228