BAC Information

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BAC

Clone NameB6Ng01-056B01
ChromosomeY (Build37)2 (Build37)
Map Location 137,187 - 137,280142,776,321 - 142,776,741
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039202, Zfy1
Downstream geneUbe1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056B01.bB6Ng01-056B01.g
ACCDH878340DH878341
length918799
definitionDH878340|Mus musculus domesticus DNA, BAC clone: B6Ng01-056B01, 5' end.DH878341|Mus musculus domesticus DNA, BAC clone: B6Ng01-056B01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(137,187 - 137,280)(142,776,321 - 142,776,741)
sequence
gaattcatagggttatccaggagattctcaaaacattttcggctattgct
agttatctttacttgtgtccacaggtggaggtaagaccctatttgctaaa
gataccatgaatatgaattttagaagccaggttcaaagtccagaaaagct
tcctccttggagattgtttttcatggtacagtaatgtgctatgtacaaat
tcaaaggagtcaggaacacaaaagtcaacacagctataatatttaatgaa
tcacatcaatgaccagtatagcatgataattgcaaggatgtagtagtgac
atacataccttggcagtaaccaacagctctctaattacacataagacctg
gtcaataagaggcaaatcatgactgctgttgaaaacttaggctagtgcat
tcatggttcttcaaagagaacctataattaacattttactaaaccaggac
aatcactaactacattatcaatatttgttcttatactcacagataaatgc
agtactcagccctcctcaaggaaacttgtctttgtagtagatgtggacct
cactcctcttaaaaaacaaaacaaaacaaaaaacaaaaaaaccccataaa
aacaaaacaaaaaacaaaacaacaacaacaaaaaccttgcttttgaagca
gatggggaccagtatagagaagtacaatcaaccaaaatgcagctatacag
ctcactccaaaggtatatatctataaaacaactcttcaccaaagctcagg
aatcatttttgaagaggggtgaaaagattataagagccagaagaccaggg
aattcggagtgagactgtgtctcccagacctactccagtaaagtattgct
aacatgactattttaaacatgagctgaacaaggatagacatgctaagtgg
atggttggaaagtctatg
gaattctcacccgaggaataacgaatggcagagaagcacctgaaaaaaat
gttcaacatctttaatcatcagggaaatgcaaattaaaataaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcaaggatgtggagaaagaggaacactcctccattgtcagt
agaattgaaagcttgtacaaccactctggaaatcagtttggccgttcctc
agaaaattggacatagtactaccagaggatcccgcaatacctctcctggg
catatatccagaagatgtcccaaccggtaagaaggacacatgctcgacta
tgttcatagcagccttgtttataatatcctagtgaccacaggtgtgtggg
ttcatttctgggtcttcaattctattccattggtctacttctctgtctcc
ataccagtaccatgcagtttttatcacaattgctctgtagtaaagcttta
ggtcaggcatggtgattccaccagaggttcttttatccttgagaaggctt
tttgctatcctaggttttttgttattccagatgaatttgcaaattgctcc
ttctaattcgttgaagaattgagttggaattttgatggggattgcattga
atctgtagattgcttttggcaagatagccatttttacaatgttgatcctg
ccaatccatgagcatgggagatctttccatcttctgagatcttctttaat
ttctttcttcagagatttgaagttttatctacagatctttcacttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_137187_137280
seq2: B6Ng01-056B01.b_613_680

seq1  AAAACAAACAAACAAACAAAAAAACCCAAAAACCAAAAACCAAAAAACAA  50
                          |||||   ||||| |||||| |||||||  
seq2  --------------------AAAAC---AAAACAAAAAACAAAAAAAC--  25

seq1  ACCACCAACAACAAAAAACAAAACAAAACAACAACAACAAAAAC  94
       ||   || ||||||| | |||||||||||||||||||||||||
seq2  -CCCATAAAAACAAAACAAAAAACAAAACAACAACAACAAAAAC  68

seq1: chr2_142776321_142776741
seq2: B6Ng01-056B01.g_448_866 (reverse)

seq1  AAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAAGA  50
      || ||||||||||||||||| ||| |||||||||| ||||||||||||||
seq2  AAAGAAGTGAAAGATCTGTA-GAT-AAAACTTCAAATCTCTGAAGAAAGA  48

seq1  AATTAAAGAAGATCTCAGAAGATGGAAGGATCTCCCATGCTCATGGATTG  100
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTG  98

seq1  GCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGA  148

seq1  TTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGA  198

seq1  AGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAA  248

seq1  AAAGTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGAC  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGAC  298

seq1  CTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTA  348

seq1  TAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGA  400
      | |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACAGAGAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGA  398

seq1  ACCCACACACCTATGGTCACT  421
      |||||||||||| ||||||||
seq2  ACCCACACACCTGTGGTCACT  419