BAC Information

Click to search

BAC

Clone NameB6Ng01-056M10
ChromosomeY (Build37)7 (Build37)
Map Location 1,120,597 - 1,120,98518,047,914 - 18,048,165
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056M10.bB6Ng01-056M10.g
ACCDH878833DH878834
length750254
definitionDH878833|Mus musculus domesticus DNA, BAC clone: B6Ng01-056M10, 5' end.DH878834|Mus musculus domesticus DNA, BAC clone: B6Ng01-056M10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,597 - 1,120,985)(18,047,914 - 18,048,165)
sequence
gaattctgcactaaacccatctggtcctcgggcttttattttttttttgg
gggggggagactattaatgaatgcttctattactagaggggatatgggac
tttttaaaaaatattttttattatatcttttcctcaattacatttccaat
gctatccccaaagtcccccataccctcacccccacttccctacccaccca
ttcccacatttttggccctggcgttcccctgtactggggcatataaagtt
tgcatgtccaatgagcctctctttccagtgatggccgactaggctatctt
ttgatacatatgaagctagagtcaagagctccggggtactggttagttca
ttatgttgttccacctatagggttgcagatcactttagctccttgggtac
tttctctagctcctccattgggggccctgtgatccatccaatagctgact
gtgagcatcaacttctgtgtttgctaggccccggcatagtctcacaagag
acagctacatctgggtcctttcgataaaatcttgctagtgtatgcaatgg
tgtcagcgtttggaagctggttatggggtggatccctggatatggcagtc
tctagatggtccatccttttgtctcagctccaaactttgtctttgtaact
cctttccaggggtgtttgtgtttcccatattctaaggagtggcatagtgt
cactcatccacactttcaatcttcatacttcttgagttttatgtgtttag

tgatattttagtatctactttattttcatttattaagtttagtaagttta
cttctaagccctatcacaaaatttcagttctctctctgttggtcgatctg
atctataaaatgttgaaccttttgttataacacctcctctaatccatgat
tccaattttcctctctctctctctctctctctctctctctctctctctct
ctctctctctctgggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtat
gtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120597_1120985
seq2: B6Ng01-056M10.b_160_547

seq1  ATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAAA  50
      |||||||||||  | |||  |||| |||||||||||||||||| || |||
seq2  ATTTTTTATTATATCTTTTCCTCAATTACATTTCCAATGCTATCCCCAAA  50

seq1  GTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCC-CCTT  99
      ||||||||||  | | |||||||||| |||| |||||||| |||| | ||
seq2  GTCCCCCATA--CCCTCACCCCCACTTCCCTACCCACCCATTCCCACATT  98

seq1  TTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCA  149
      |||||||||||  ||||||||||||||||||||||||||||||| |||||
seq2  TTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCATGTCCA  148

seq1  ATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATA  199
      ||| |||||||||||||||||||||||||||||| ||||||||||| |||
seq2  ATGAGCCTCTCTTTCCAGTGATGGCCGACTAGGCTATCTTTTGATACATA  198

seq1  TGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCATAACGTTGTT  249
      || ||||||||||||||||||||||||||||||||| |||| | ||||||
seq2  TGAAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATTATGTTGTT  248

seq1  CCACCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGC  299
      ||||||||||||||| ||||| |||||||||||||| |||||||||||||
seq2  CCACCTATAGGGTTGCAGATCACTTTAGCTCCTTGGGTACTTTCTCTAGC  298

seq1  TCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACTGTGAGCATCC  349
      |||||||||||| ||||| ||||||||||| |||||||||||||||||| 
seq2  TCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCA  348

seq1  ACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTCACAAGAG  389
      ||||||||||||||| ||||||||||||||||||||||||
seq2  ACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAG  388

seq1: chr7_18047914_18048165
seq2: B6Ng01-056M10.g_77_330 (reverse)

seq1  ACACATACACACACACACACACACACACACACACACA--CACAGAGAGAG  48
      |||||||||||||||||||||||||||||||||||||  | |||||||||
seq2  ACACATACACACACACACACACACACACACACACACACCCCCAGAGAGAG  50

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAAAT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAAAT  100

seq1  TGGAATCATGGATTAGAGGAGGTGTTATAACAAAAGGTTCAACATTTTAT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCATGGATTAGAGGAGGTGTTATAACAAAAGGTTCAACATTTTAT  150

seq1  AGATCAGATCGACCAACAGAGAGAGAACTGAAATTTTGTGATAGGGCTTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGATCGACCAACAGAGAGAGAACTGAAATTTTGTGATAGGGCTTA  200

seq1  GAAGTAAACTTACTAAACTTAATAAATGAAAATAAAGTAGATACTAAAAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAACTTACTAAACTTAATAAATGAAAATAAAGTAGATACTAAAAT  250

seq1  ATCA  252
      ||||
seq2  ATCA  254