BAC Information

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BAC

Clone NameB6Ng01-058A18
ChromosomeY (Build37)5 (Build37)
Map Location 2,430,590 - 2,430,64645,519,113 - 45,520,278
singlet/doubletsingletsinglet
Overlap geneLOC676356
Upstream geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581
Downstream geneLOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058A18.bB6Ng01-058A18.g
ACCDH879733DH879734
length1701,153
definitionDH879733|Mus musculus domesticus DNA, BAC clone: B6Ng01-058A18, 5' end.DH879734|Mus musculus domesticus DNA, BAC clone: B6Ng01-058A18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(2,430,590 - 2,430,646)(45,519,113 - 45,520,278)
sequence
aaggcccatacctaaacacagtaaaagcaatatacagcaaaccagtagtc
aatatcaaactaaatggaaagacacttgaagcaatcccactaaaatcagg
gtctagacaaggctgctctctctctctctctctctctctctctctctctc
tctctctctctctctttctc
gaattctcagtaccaattttctgtgttggctccagtgcttctgggtctga
gtgaggcagtacatcacagcaatgaggcttggtagaaggggctccttact
gcccaacaaccaggaaatagaagtatttatatgtagtattttccccttta
tcaaactcttggtcacccagagagatagagttttacagaaaacataagga
aataaataaacaaatagatacatactgatattattttccttttcagtgat
taacttttggactaaatggcctttgccctagttgcttccaatgacttcaa
caaaatgttttgttcacacaattttgttttgttttcagataccattgtga
actgatagttttgaatatacagatgtgtttcaatccattgcatttaattc
tcttactcaagttcacattatcccttatttggctgggaagcacctcttta
agtgcctcctaccctggggcttatctattacatttctgtcccagagtagg
agtgggctactgcttctggaatcctggattcctgttagtggaaatagtaa
ttagatgccttagtgtgcagtgttgttttacaaagatgtttatatattta
gaatatccattctttaagttttggtacgacttaaaattcttcctggtttg
tcatttggctctgaggtctctaatgattttgttccatacacatttttttt
tctgtgtcgacttttagattaattttactacttctttaaaactcaatttc
tgggtctagacagatggcgcagctactaagaatgtgtactgtagaggacc
agaggttggttctcacgctgtatgactcatacccacctacaactcacatg
agatctgggggcggggagggttctcatgctctcatctggcctccgtacac
tctgcactcacattcatatatacagaggctacaaagttaaaaatcacttt
taaactcactttcgagattttggctgaagtggatcatgattaagaagaca
tctgagaagcttggtgtgacgtaggcagacgtgccaccaactgccattca
tggttaagatatgacatttttcttaatgaaaagccatctgggagtatacg
cggggtttctggaagggtttccttgtagcctctggggaaggacttttctt
ctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_2430590_2430646
seq2: B6Ng01-058A18.b_166_222

seq1  TGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50

seq1  CTCTCTC  57
      || ||||
seq2  CTTTCTC  57

seq1: chr5_45519113_45520278
seq2: B6Ng01-058A18.g_68_1220 (reverse)

seq1  GAGAAGAAAAGATGCCTACTCCCATAGGGCTCAAGGAAAACCTTCTCCAG  50
      |||||||||||   ||| | |||| |||   |||||||| |||  |||||
seq2  GAGAAGAAAAG--TCCTTC-CCCAGAGGCTACAAGGAAACCCT--TCCAG  45

seq1  AAACACCCCGCTCAACTCCCAGATGGCTTTGTCATTTAAGAAAAATGTCA  100
      |||| || || |  |||||||||||||||| ||| |||||||||||||||
seq2  AAACCCCGCG-TATACTCCCAGATGGCTTT-TCA-TTAAGAAAAATGTCA  92

seq1  TTCCTTAAGCATGAATGGCAGTTTGGGTGGCACGTCTGCCTACGTCACA-  149
      |  ||||| ||||||||||||||  |||||||||||||||||||||||| 
seq2  TATCTTAACCATGAATGGCAGTT--GGTGGCACGTCTGCCTACGTCACAC  140

seq1  CAGGCTTCTCAGGATGTCTTCTTAATCATTGATCCACTTCAGCCAAAATC  199
      || |||||||| |||||||||||||||| |||||||||||||||||||||
seq2  CAAGCTTCTCA-GATGTCTTCTTAATCA-TGATCCACTTCAGCCAAAATC  188

seq1  TCGAAAGTGAGTTTTAAAAGTGATTTTTAACTTTGTTAGCCTCTGTATAT  249
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  TCGAAAGTGAG-TTTAAAAGTGATTTTTAACTTTG-TAGCCTCTGTATAT  236

seq1  ATGAATGTGAGTGCAGAGTGTACGGAGGCCAGATGAGAGCATGAGAACCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGTGAGTGCAGAGTGTACGGAGGCCAGATGAGAGCATGAGAACCC  286

seq1  TCCCCGCCCCCAGATCTCATGTGAGTTGTAGGTGGGTATGAGTCATACAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGCCCCCAGATCTCATGTGAGTTGTAGGTGGGTATGAGTCATACAG  336

seq1  CGTGAGAACCAACCTCTGGTCCTCTACAGTACACATTCTTAGTAGCTGCG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGAACCAACCTCTGGTCCTCTACAGTACACATTCTTAGTAGCTGCG  386

seq1  CCATCTGTCTAGACCCAGAAATTGAGTTTTAAAGAAGTAGTAAAATTAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGTCTAGACCCAGAAATTGAGTTTTAAAGAAGTAGTAAAATTAAT  436

seq1  CTAAAAGTCGACACAGAAAAAAAAATGTGTATGGAACAAAATCATTAGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGTCGACACAGAAAAAAAAATGTGTATGGAACAAAATCATTAGAG  486

seq1  ACCTCAGAGCCAAATGACAAACCAGGAAGAATTTTAAGTCGTACCAAAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGAGCCAAATGACAAACCAGGAAGAATTTTAAGTCGTACCAAAAC  536

seq1  TTAAAGAATGGATATTCTAAATATATAAACATCTTTGTAAAACAACACTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAATGGATATTCTAAATATATAAACATCTTTGTAAAACAACACTG  586

seq1  CACACTAAGGCATCTAATTACTATTTCCACTAACAGGAATCCAGGATTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTAAGGCATCTAATTACTATTTCCACTAACAGGAATCCAGGATTCC  636

seq1  AGAAGCAGTAGCCCACTCCTACTCTGGGACAGAAATGTAATAGATAAGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGTAGCCCACTCCTACTCTGGGACAGAAATGTAATAGATAAGCC  686

seq1  CCAGGGTAGGAGGCACTTAAAGAGGTGCTTCCCAGCCAAATAAGGGATAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTAGGAGGCACTTAAAGAGGTGCTTCCCAGCCAAATAAGGGATAA  736

seq1  TGTGAACTTGAGTAAGAGAATTAAATGCAATGGATTGAAACACATCTGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACTTGAGTAAGAGAATTAAATGCAATGGATTGAAACACATCTGTA  786

seq1  TATTCAAAACTATCAGTTCACAATGGTATCTGAAAACAAAACAAAATTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAAACTATCAGTTCACAATGGTATCTGAAAACAAAACAAAATTGT  836

seq1  GTGAACAAAACATTTTGTTGAAGTCATTGGAAGCAACTAGGGCAAAGGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACAAAACATTTTGTTGAAGTCATTGGAAGCAACTAGGGCAAAGGCC  886

seq1  ATTTAGTCCAAAAGTTAATCACTGAAAAGGAAAATAATATCAGTATGTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTCCAAAAGTTAATCACTGAAAAGGAAAATAATATCAGTATGTAT  936

seq1  CTATTTGTTTATTTATTTCCTTATGTTTTCTGTAAAACTCTATCTCTCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGTTTATTTATTTCCTTATGTTTTCTGTAAAACTCTATCTCTCTG  986

seq1  GGTGACCAAGAGTTTGATAAAGGGGAAAATACTACATATAAATACTTCTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCAAGAGTTTGATAAAGGGGAAAATACTACATATAAATACTTCTA  1036

seq1  TTTCCTGGTTGTTGGGCAGTAAGGAGCCCCTTCTACCAAGCCTCATTGCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGTTGTTGGGCAGTAAGGAGCCCCTTCTACCAAGCCTCATTGCT  1086

seq1  GTGATGTACTGCCTCACTCAGACCCAGAAGCACTGGAGCCAACACAGAAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGTACTGCCTCACTCAGACCCAGAAGCACTGGAGCCAACACAGAAA  1136

seq1  ATTGGTACTGAGAATTC  1166
      |||||||||||||||||
seq2  ATTGGTACTGAGAATTC  1153