BAC Information

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BAC

Clone NameB6Ng01-059C15
Chromosome6 (Build37)Y (Build37)
Map Location 18,835,448 - 18,835,968573,443 - 573,550
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059C15.bB6Ng01-059C15.g
ACCDH880525DH880526
length1,002934
definitionDH880525|Mus musculus domesticus DNA, BAC clone: B6Ng01-059C15, 5' end.DH880526|Mus musculus domesticus DNA, BAC clone: B6Ng01-059C15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,448 - 18,835,968)(573,443 - 573,550)
sequence
gaattctttgttcagttctgagccccaattttcaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagtacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccactgagatttgaccttagtacaaggagataagtatggatcgatttgc
attcttctacacaataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaacataggtgtgtgggttcatttctgggtcttcaattctattccatttg
tctacttgtctgtctctataccagtaccatgcagttttttttttcatttt
ttattaggtatttagctcatttacatttccaatgctataccaaaagtccc
ccatagccacccacccccactcccctacccacccactccccttttttggc
cttggcattcccctgtactggggcatataaagtttgcaagtccaatgggc
ctctctttccagtgatggcctactaggccatcttttgatacatatgcagc
tagagtcaagagctccggggtactgggttagttcataatgttgttccacc
tatagggttgcagatccctttagcttcttgggtacttttctctagctcct
tcgttgggggccatgtgatccatccaatagccgactgtgagcatccactt
ctttgtttgctaggcccaggatactctgacaagagacagctatgtcaggt
cc
gaattcctgatctttctaagacttttaacctaaagaggtgttgcattttg
tcgaaggctttttcagcatctaatgagatgatcatgtgattttttttctt
tgagtttgtttatgtagtggattaaattgatgtatttctttttaaaaatt
tattcgatattttctttacttacatttcaaagttccctataccctctccc
tgtcctgttcccctacccacccactcccacttcttggccctggctttccc
ctgtactggggcatataaagtttgtaagacctaggggcctctcttcccaa
tgatggccgactaggccaaggttgatgtatttctgaatattgaaccatcc
ctgtgttcctgggatgaagcctacttggtcttggtggataatggatttga
tgtgttcttggatttggtctgttagaattttattgagtatttttgcatcg
atattcctaagtgaaattgatctgaagttgggtctttgttgagtctttat
gtggcttaggtatcagcataactgtggcttcatgggatgaattaggtagt
attccttcgggttctattttgtggaatagtttgagtagtattggtatcaa
ggtctgatataattttttcactaaaaccatctggacctgggcttcttctt
tgggtcaggagacttttaacgactatttttatttccttattgattatgag
attgtttatctatttttttttttaagtcagggtttctctgtgtagccttg
ggttgtcctggaactcattgtgtagaccaggtggtcttcaactcagaagt
ctgcctgcctctgcttcccaagtgctgggattaaaggcgtgcgccaccac
gccgggctgtttatttatttatctggtcctgatttcactttggtactgtc
taaaaaatcatccatttcatgtagatttccaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835448_18835968
seq2: B6Ng01-059C15.b_46_567 (reverse)

seq1  ATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAAC  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATGAACCCACACACCTATGTTCACTTGATCTTCGACAAGGGAGCTAAAAC  50

seq1  CATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACT  100

seq1  GGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCTCCATGT  150
      |||||||||  ||||||||||||  ||||||||||||||||||||| |||
seq2  GGTTGTTATTGTGTAGAAGAATGCAAATCGATCCATACTTATCTCCTTGT  150

seq1  ACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGAC  200
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACTAAGGTCAAATCTCAGTGGATCAAGGAACTTCACATAAAACCAGAGAC  200

seq1  ACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCA  250

seq1  GAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTGAGGTAG  299
       ||||||||| ||||||||||||||||||||||| ||| |||| || | |
seq2  CAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTACTGTAAGATCG  300

seq1  AGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAA  349
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAA  350

seq1  AGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCT  400

seq1  TTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAA  450

seq1  CTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAAATGGGG  499
      ||||||||||||||||||||||||||||||||||||||| | || |||||
seq2  CTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTGAAAATTGGGG  500

seq1  CTCAGAACTGAACAAAGAATTC  521
      ||||||||||||||||||||||
seq2  CTCAGAACTGAACAAAGAATTC  522

seq1: chrY_573443_573550
seq2: B6Ng01-059C15.g_278_385 (reverse)

seq1  TGGCCTAGTTGGCCATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACT  50
      ||||||||| |||||||||||||||||||||||||| |||||| ||||||
seq2  TGGCCTAGTCGGCCATCATTGGGAAGAGAGGCCCCTAGGTCTTACAAACT  50

seq1  TTATATGCCCCAGTACAGGGGAACACCAGGGCCAAGAAGTGGGAGAAGGT  100
      |||||||||||||||||||||||  ||||||||||||||||||||  |||
seq2  TTATATGCCCCAGTACAGGGGAAAGCCAGGGCCAAGAAGTGGGAGTGGGT  100

seq1  GGGTAGGG  108
      ||||||||
seq2  GGGTAGGG  108