BAC Information

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BAC

Clone NameB6Ng01-061I05
ChromosomeY (Build37)10 (Build37)
Map Location 573,917 - 574,161111,259,003 - 111,259,990
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061I05.bB6Ng01-061I05.g
ACCDH882170DH882171
length107978
definitionDH882170|Mus musculus domesticus DNA, BAC clone: B6Ng01-061I05, 5' end.DH882171|Mus musculus domesticus DNA, BAC clone: B6Ng01-061I05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,917 - 574,161)(111,259,003 - 111,259,990)
sequence
actatgtagaccaacctgaccttgacaactcacagaaatctgcctgcctc
agcctcccaagtggtcctctgcaagagcagtaagtgttcttaaccactga
gccatct
gaattcagtaggtaaacatgcttgttatacagacacaaggacatgagtta
caatccctaagcacccacgggtgaaaaagtcacccacggcataaagcacg
cataatcccagaactggcaggtagagacagaaggatcatgggagcctgac
gaccaggttcaatgagaatcctacctccaagaatgatagagatggacatc
aaagatcaatcttcagctttgatacaaccatgcgtagatgcccctctata
ccacaaaccacacacacacacacacacacacacactcacacacacacaca
cacacacacttttttttcagcattaaaatatctccattctgacaatgagt
ctctgaaaaaaaaagaaaagaaatcaaactgcatatttgctctctaaaaa
tcagctcatctccttcaacagctaggacattctgctgtcacagacatgac
tttaagaaagacagaatgagtcaaaagataaccatcagaacaaagaaaga
ccatgaaagcattagccaagaagagaaggtatgcagattgtacggctgct
gccttcaagcggttcagtgctaagcctgtgggagaggggatcaggttatc
ctgcacgactgcaaaggacaggactaaaaatctaaaggcagaatttgaga
ggcaatcacatgaccccaggaaaggtaacggtaagaggtggagcaactcg
gcaaaatttactacctaagaagcgatgaaccacaaccataaattgtgttc
aaaacagaaaaaaaaaaaaaaaagaaagaaagaaagaaagaaagaagata
gaaaaagctaacatttccaaaatctgttattatacttaaatctacagttc
atacatttaatagttctctggacgggaggggtgtcattacatctcaggaa
tgacaaaataacagcagcacaaaacaggaggtggtgtagcactctttgta
catgggtggagggaagtcgaggtatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573917_574161
seq2: B6Ng01-061I05.b_84_158

seq1  CAGAAATCTGCCTGCCTCTGCCTCCCAAGCGCTGGGATTAAAGGCGTGCG  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCGCCGCCACCTGGCAACTCTATCACTTTTTAAAAAAGATTTATTCATTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CGTGTACGTGACTGTCTTTAAACACGCCCTAGAAAGAGAGCATCAGATCC  150
                                                 ||||   
seq2  -------------------------------------------CAGA---  4

seq1  CTATTATAGATGTTTGTGAGCC-ACCATGTGGTTGCTGGGAATTAAACTG  199
        | | |   ||    | ||||  ||| |||||                 
seq2  --AATCTGCCTG--CCTCAGCCTCCCAAGTGGT-----------------  33

seq1  AGGACCTCTGGAAGTGCCATCAGAGGTCTTAACCACTGAGCTATCT  245
          |||||| ||| ||  | || | ||||||||||||||| ||||
seq2  ----CCTCTGCAAGAGCAGTAAGTGTTCTTAACCACTGAGCCATCT  75

seq1: chr10_111259003_111259990
seq2: B6Ng01-061I05.g_70_1047 (reverse)

seq1  AAAATATACCCTCGACTTCCCTCCACCCATGCTACAAAGAGTTGCTACAC  50
      ||||||   |||||||||||||||||||||| ||||||||| ||||||||
seq2  AAAATA---CCTCGACTTCCCTCCACCCATG-TACAAAGAG-TGCTACAC  45

seq1  CAACCTCCTGTTTTGTTGCTGCTGTTATTTTGTCATTCCTGAGGTGTAAC  100
      | ||||||||||||| ||||||||||||||||||||||||||| ||||| 
seq2  C-ACCTCCTGTTTTG-TGCTGCTGTTATTTTGTCATTCCTGAGATGTAA-  92

seq1  TGACACCCCTCCCGTCCCAGGAACTATTAAATGTATGAACTGTAGATTTA  150
      |||||||||||||||||   ||||||||||||||||||||||||||||||
seq2  TGACACCCCTCCCGTCCAGAGAACTATTAAATGTATGAACTGTAGATTTA  142

seq1  AGTATAATAACAGATTTTGG-AATGTTAGCTTTTTCTTTCTTTCTTTCTT  199
      |||||||||||||||||||| |||||||||||||||| || |||||||||
seq2  AGTATAATAACAGATTTTGGAAATGTTAGCTTTTTCTATC-TTCTTTCTT  191

seq1  TCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTCTGTTTTGAACACAATTT  249
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTC--TTTTTTTTTTTTTTTTCTGTTTTGAACACAATTT  239

seq1  ATGGTTGTGGTTCATCGCTTCTTAGGTAGTAAATTTTGCCGAGTTGCTCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTGGTTCATCGCTTCTTAGGTAGTAAATTTTGCCGAGTTGCTCC  289

seq1  ACCTCTTACCGTTACCTTTCCTGGGGTCATGTGATTGCCTCTCAAATTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTACCGTTACCTTTCCTGGGGTCATGTGATTGCCTCTCAAATTCT  339

seq1  GCCTTTAGATTTTTAGTCCTGTCCTTTGCAGTCGTGCAGGATAACCTGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAGATTTTTAGTCCTGTCCTTTGCAGTCGTGCAGGATAACCTGAT  389

seq1  CCCCTCTCCCACAGGCTTAGCACTGAACCGCTTGAAGGCAGCAGCCGTAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCCCACAGGCTTAGCACTGAACCGCTTGAAGGCAGCAGCCGTAC  439

seq1  AATCTGCATACCTTCTCTTCTTGGCTAATGCTTTCATGGTCTTTCTTTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCATACCTTCTCTTCTTGGCTAATGCTTTCATGGTCTTTCTTTGT  489

seq1  TCTGATGGTTATCTTTTGACTCATTCTGTCTTTCTTAAAGTCATGTCTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGGTTATCTTTTGACTCATTCTGTCTTTCTTAAAGTCATGTCTGT  539

seq1  GACAGCAGAATGTCCTAGCTGTTGAAGGAGATGAGCTGATTTTTAGAGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGAATGTCCTAGCTGTTGAAGGAGATGAGCTGATTTTTAGAGAG  589

seq1  CAAATATGCAGTTTGATTTCTTTTCTTTTTTTTTCAGAGACTCATTGTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGCAGTTTGATTTCTTTTCTTTTTTTTTCAGAGACTCATTGTCA  639

seq1  GAATGGAGATATTTTAATGCTGAAAAAAAAGTGTGTGTGTGTGTGTGTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAGATATTTTAATGCTGAAAAAAAAGTGTGTGTGTGTGTGTGTGT  689

seq1  GTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGGTTTGTGGTATAGAGGGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGGTTTGTGGTATAGAGGGGC  739

seq1  ATCTACGCATGGTTGTATCAAAGCTGAAGATTGATCTTTGATGTCCATCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACGCATGGTTGTATCAAAGCTGAAGATTGATCTTTGATGTCCATCT  789

seq1  CTATCATTCTTGGAGGTAGGATTCTCATTGAACCTGGTCGTCAGGCTCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATTCTTGGAGGTAGGATTCTCATTGAACCTGGTCGTCAGGCTCCC  839

seq1  ATGATCCTTCTGTCTCTACCTGCCAGTTCTGGGATTATGCGTGCTTTATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCCTTCTGTCTCTACCTGCCAGTTCTGGGATTATGCGTGCTTTATG  889

seq1  CCGTGGGTGACTTTTTCACCCGTGGGTGCTTAGGGATTGTAACTCATGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGGGTGACTTTTTCACCCGTGGGTGCTTAGGGATTGTAACTCATGTC  939

seq1  CTTGTGTCTGTATAACAAGCATGTTTACCTACTGAATTC  988
      |||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTCTGTATAACAAGCATGTTTACCTACTGAATTC  978