BAC Information

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BAC

Clone NameB6Ng01-062A19
Chromosome8 (Build37)Y (Build37)
Map Location 105,324,639 - 105,325,7851,870,346 - 1,870,460
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCdh11
Downstream geneEG667618, LOC100041368, 1600027J07Rik, LOC100041397
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062A19.bB6Ng01-062A19.g
ACCDH882562DH882563
length1,123500
definitionDH882562|Mus musculus domesticus DNA, BAC clone: B6Ng01-062A19, 5' end.DH882563|Mus musculus domesticus DNA, BAC clone: B6Ng01-062A19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(105,324,639 - 105,325,785)(1,870,346 - 1,870,460)
sequence
gaattccaagagaatatgtcttctaatgacaagtttgagaagcctcacaa
atggaggaaagatcagctatgaagcagaggctgcagcggctcagagacat
acattttggaacatctcgccgaaggatttagtgctgtcataaaagggaat
ggtccatataagctatatcatacgattgggcctctcaatgtcttcccctc
ttttttgaaagccattgttcaccaaatatctgaagacaagcaattttgct
ctagctaaatctgttctttgctgaaaagctggccctctctttcagctgac
tttggtatctgtcactaattttatggtttttaatttcacagattgttgtt
cttgttctgaattctgaagacaagacaataacaacttattaaaatcccaa
cagagcaaacccaaaatcacgaaagaaattttgcttttcttaaagttcta
cagtcttaaaattcctagcacagaacatggcacacacaataggggctcaa
ttacatgaggtctttctgatgaaacagtgtgtatttcatttcatacaaca
aaaggcttcttctttttctaaagacaaaagttaagtggaatttctcaggt
tatagtaaattaaaattagtagcagcttaatctgtctttctccaaacaaa
tttgcaatgcttagcattctttgtctgtttttctgtaacatgtcgttatt
ccatattaaatgccatctaacctctaaaaaaaaccactgaaagcaaagtg
taaaaactcaaacatttattattaggttttatagcatttaaaacttaaaa
ttaagagttggggattgtacattttgacacaatcaaccgtatagacatgt
taacatcttggcaaggggttcctttgcaggcacaaatttatcattaggaa
ataggatactcattttttgcttgattaattacagcttaagcataaatata
gagtgtgtagtgagcatgcgctatttgtaatacataaaatgtgattatgg
taagctgaagatcacccaaatattcacaagatctcttggggtgaatataa
attagtttgaatggattaagaattgatctataaacctagaagaatgcact
caatgctactgacctaaagtaaa
gaattctttgtttagctctgtaccccaattttaatggggttatttgaatt
tctggagttcagcttcttgagctctttgtatatattgtatattagtcccc
tatcagatttaggattggtaaaaatcctttcctcccatggaaggagttac
agagacggagtttggagctgagatgaaaggatggaccatgtagagactgc
catagccagggatccaccccataatcagcatccaaacgctgacaccattg
catacactagcaagattttattgaaaggacgcagatgtagctgtctcttg
tgagactatgccggggcccagcaaacacagaagtggatgctcacagtcag
ctaatggatggatcatagggctcccaatggaggagctagagaaagtagcc
aaggagctaaagggatctgcaaccctataggtggaacaacattatgagct
aaccagtaccccggagctcttgactctagctgcatatatatcaaaagatg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_105324639_105325785
seq2: B6Ng01-062A19.b_44_1166

seq1  GAATTCCAAGAGAATATGTCTTCTAATGACAAGTTTGAGAAGCCTCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGAGAATATGTCTTCTAATGACAAGTTTGAGAAGCCTCACAA  50

seq1  ATGGAGGAAAGATCAGCTATGAAGCAGAGGCTGCAGCGGCTCAGAGACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGAAAGATCAGCTATGAAGCAGAGGCTGCAGCGGCTCAGAGACAT  100

seq1  ACATTTTGGAACATCTCGCCGAAGGATTTAGTGCTGTCATAAAAGGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTGGAACATCTCGCCGAAGGATTTAGTGCTGTCATAAAAGGGAAT  150

seq1  GGTCCATATAAGCTATATCATACGATTGGGCCTCTCAATGTCTTCCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATATAAGCTATATCATACGATTGGGCCTCTCAATGTCTTCCCCTC  200

seq1  TTTTTTGAAAGCCATTGTTCACCAAATATCTGAAGACAAGCAATTTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAAAGCCATTGTTCACCAAATATCTGAAGACAAGCAATTTTGCT  250

seq1  CTAGCTAAATCTGTTCTTTGCTGAAAAGCTGGCCCTCTCTTTCAGCTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTAAATCTGTTCTTTGCTGAAAAGCTGGCCCTCTCTTTCAGCTGAC  300

seq1  TTTGGTATCTGTCACTAATTTTATGGTTTTTAATTTCACAGATTGTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTATCTGTCACTAATTTTATGGTTTTTAATTTCACAGATTGTTGTT  350

seq1  CTTGTTCTGAATTCTGAAGACAAGACAATAACAACTTATTAAAATCCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCTGAATTCTGAAGACAAGACAATAACAACTTATTAAAATCCCAA  400

seq1  CAGAGCAAACCCAAAATCACGAAAGAAATTTTGCTTTTCTTAAAGTTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAAACCCAAAATCACGAAAGAAATTTTGCTTTTCTTAAAGTTCTA  450

seq1  CAGTCTTAAAATTCCTAGCACAGAACATGGCACACACAATAGGGGCTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTAAAATTCCTAGCACAGAACATGGCACACACAATAGGGGCTCAA  500

seq1  TTACATGAGGTCTTTCTGATGAAACAGTGTGTATTTCATTTCATACAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGAGGTCTTTCTGATGAAACAGTGTGTATTTCATTTCATACAACA  550

seq1  AAAGGCTTCTTCTTTTTCTAAAGACAAAAGTTAAGTGGAATTTCTCAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTTCTTCTTTTTCTAAAGACAAAAGTTAAGTGGAATTTCTCAGGT  600

seq1  TATAGTAAATTAAAATTAGTAGCAGCTTAATCTGTCTTTCTCCAAACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTAAATTAAAATTAGTAGCAGCTTAATCTGTCTTTCTCCAAACAAA  650

seq1  TTTGCAATGCTTAGCATTCTTTGTCTGTTTTTCTGTAACATGTCGTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAATGCTTAGCATTCTTTGTCTGTTTTTCTGTAACATGTCGTTATT  700

seq1  CCATATTAAATGCCATCTAACCTCTAAAAAAAACCACTGAAAGCAAAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTAAATGCCATCTAACCTCTAAAAAAAACCACTGAAAGCAAAGTG  750

seq1  TAAAAACTCAAACATTTATTATTAGGTTTTATAGCATTTAAAACTTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACTCAAACATTTATTATTAGGTTTTATAGCATTTAAAACTTAAAA  800

seq1  TTAAGAGTTGGGGATTGTACATTTTGACACAATCAACCGTATAGACATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGTTGGGGATTGTACATTTTGACACAATCAACCGTATAGACATGT  850

seq1  TAACATCTTGGCAAGGGGTTCCTTTGCAGGCACAAATTTATCATTAGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCTTGGCAAGGGGTTCCTTTGCAGGCACAAATTTATCATTAGGAA  900

seq1  ATAGGATACTCATTTTTTGCTTGATTAATTACAGCTTAAGCATAAATATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATACTCATTTTTTGCTTGATTAATTACAGCTTAAGCATAAATATA  950

seq1  GAGTGTGTAGTGGAGCATGCGCTATTTGTAATACATAAAATTGTGATTTA  1000
      ||||||||||| |||||||||||||||||||||||||||| ||||| |||
seq2  GAGTGTGTAGT-GAGCATGCGCTATTTGTAATACATAAAA-TGTGA-TTA  997

seq1  TGGGTAAGCTGAAGGATCAACCCAAATATTTCACAAGAATCTCTTGGGGT  1050
      | ||||||||||| |||| ||||||||| |||||||| ||||||||||||
seq2  T-GGTAAGCTGAA-GATC-ACCCAAATA-TTCACAAG-ATCTCTTGGGGT  1042

seq1  GAATATAAATTTTAGTTTTGAAATGATTTTAAGAATTTGATTCTATAAAC  1100
      |||||||||  |||| ||||||  ||  ||||||| |||| |||||||||
seq2  GAATATAAA--TTAG-TTTGAATGGA--TTAAGAA-TTGA-TCTATAAAC  1085

seq1  TTAAGAAGAAATGCACCTTACAAATGCTACTTAAACTTAAAAGTAAA  1147
       | ||||| |||||||      |||||||||   || | ||||||||
seq2  CT-AGAAG-AATGCAC----TCAATGCTACT--GACCT-AAAGTAAA  1123

seq1: chrY_1870346_1870460
seq2: B6Ng01-062A19.g_455_569

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||| ||||||| |||||| |||||||||||||| |||||||
seq2  ACAACATTATGAGCTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATG  115
      |  ||||||||||||
seq2  ATATATCAAAAGATG  115