BAC Information

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BAC

Clone NameB6Ng01-063K16
Chromosome10 (Build37)Y (Build37)
Map Location 65,375,010 - 65,376,156573,321 - 573,550
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCtnna3, LOC665206, LOC216036
Downstream gene1700023F02Rik, 4930407I19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063K16.bB6Ng01-063K16.g
ACCDH883689DH883690
length1,114386
definitionDH883689|Mus musculus domesticus DNA, BAC clone: B6Ng01-063K16, 5' end.DH883690|Mus musculus domesticus DNA, BAC clone: B6Ng01-063K16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(65,375,010 - 65,376,156)(573,321 - 573,550)
sequence
gaattctccacctctgccagttttaaaacaggccttgtcctgtgcagaat
aaaacaagtcttaatatagctgtgttttattggtaaattctaaaataaag
agtagaaagcagatggaattactgtgatatccaaagctgagcaatgtcat
aaaggtccaaaataagcaataatgattactaaatgcgaataaccaaagtc
atgcatttaataccttacttctctgtgcactaagcttgagaagacactct
gtgctttagcaagcccaggtatcatccactatgcctcacctgtttctagt
ggaagcatttttttttcaaatatcattaaataaattttaactttagtttc
aagcaacattattagtatttctagactgtgcatctcctttgcccggctca
aaaatgactcagaatataactccaagttatcaagcttgggaaattgaaat
ggaaattcagacgtgggcgttttcagtgtggttaggaagcatgcaattga
aattgaatgctcagcagtaaacagtaccggagccagaggccttttgaatt
ttcattacgaaattcacgtaaatgattaaagcatttgcagatagggtctt
ctctttccttcatcaataagagcagcatttggaggtatttaattttgaac
caaaaaggcaatggcattcacaatgcagaatctatgatgtttaggagtgt
gacagacacaggatttgtattgtggtttatacatgaaggaaacatggggc
agtaaatactgagatgaaagggaaaggctttaagcatttagggggaacaa
tgttcatttgatcttcaattttaaacttctaaactttatttagcatggtg
ttccgttgctatgtttggttttagacacaaatatacttgagcacacagac
aggaaatgtggaagctctggtatgatttcagagattctgtctgtgtataa
gtagaaaatgtctccaactacaaaagaatctattgataacagtgccgaaa
tgtattatcagattatgattttactactcctgagacttcaagagtatgca
cgaagccactgaacttgtgctcatgtgagcttatgccagatgccagactc
tctcactgggcaca
attgttttttattgtttgtttttttttcaattgggtatttatttcattta
catttccaatgctatggctttctcttgtgagactatgctggggcctggca
aacacagaagtggatgctcacagtcagctattggatgggtcacacggccc
ccaatggaggagctagagaaagtacccaaggagatgaagggatctgcaat
cctataggtggaacaacaatatgaactaaccaatactcccccggagctct
tgtctctagctgcatatgaatcagaagatggcctattcggccatcagtgg
aaagagaggcccattggtcttgcaaactttatatgcctcagtacagggga
atgccagggccaagaagtaggagtgggtgggaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_65375010_65376156
seq2: B6Ng01-063K16.b_46_1159

seq1  GAATTCTCCACCTCTGCCAGTTTTAAAACAGGCCTTGTCCTGTGCAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCACCTCTGCCAGTTTTAAAACAGGCCTTGTCCTGTGCAGAAT  50

seq1  AAAACAAGTCTTAATATAGCTGTGTTTTATTGGTAAATTCTAAAATAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGTCTTAATATAGCTGTGTTTTATTGGTAAATTCTAAAATAAAG  100

seq1  AGTAGAAAGCAGATGGAATTACTGTGATATCCAAAGCTGAGCAATGTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAAGCAGATGGAATTACTGTGATATCCAAAGCTGAGCAATGTCAT  150

seq1  AAAGGTCCAAAATAAGCAATAATGATTACTAAATGCGAATAACCAAAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCCAAAATAAGCAATAATGATTACTAAATGCGAATAACCAAAGTC  200

seq1  ATGCATTTAATACCTTACTTCTCTGTGCACTAAGCTTGAGAAGACACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTAATACCTTACTTCTCTGTGCACTAAGCTTGAGAAGACACTCT  250

seq1  GTGCTTTAGCAAGCCCAGGTATCATCCACTATGCCTCACCTGTTTCTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTAGCAAGCCCAGGTATCATCCACTATGCCTCACCTGTTTCTAGT  300

seq1  GGAAGCATTTTTTTTTCAAATATCATTAAATAAATTTTAACTTTAGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCATTTTTTTTTCAAATATCATTAAATAAATTTTAACTTTAGTTTC  350

seq1  AAGCAACATTATTAGTATTTCTAGACTGTGCATCTCCTTTGCCCGGCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACATTATTAGTATTTCTAGACTGTGCATCTCCTTTGCCCGGCTCA  400

seq1  AAAATGACTCAGAATATAACTCCAAGTTATCAAGCTTGGGAAATTGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACTCAGAATATAACTCCAAGTTATCAAGCTTGGGAAATTGAAAT  450

seq1  GGAAATTCAGACGTGGGCGTTTTCAGTGTGGTTAGGAAGCATGCAATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTCAGACGTGGGCGTTTTCAGTGTGGTTAGGAAGCATGCAATTGA  500

seq1  AATTGAATGCTCAGCAGTAAACAGTACCGGAGCCAGAGGCCTTTTGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATGCTCAGCAGTAAACAGTACCGGAGCCAGAGGCCTTTTGAATT  550

seq1  TTCATTACGAAATTCACGTAAATGATTAAAGCATTTGCAGATAGGGTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTACGAAATTCACGTAAATGATTAAAGCATTTGCAGATAGGGTCTT  600

seq1  CTCTTTCCTTCATCAATAAGAGCAGCATTTGGAGGTATTTAATTTTGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCTTCATCAATAAGAGCAGCATTTGGAGGTATTTAATTTTGAAC  650

seq1  CAAAAAGGCAATGGCATTCACAATGCAGAATCTATGATGTTTAGGAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGGCAATGGCATTCACAATGCAGAATCTATGATGTTTAGGAGTGT  700

seq1  GACAGACACAGGATTTGTATTGTGGTTTATACATGAAGGAAACATGGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACACAGGATTTGTATTGTGGTTTATACATGAAGGAAACATGGGGC  750

seq1  AGTAAATACTGAGATGAAAGGGAAAGGCTTTAAGCATTTAGGGGGAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATACTGAGATGAAAGGGAAAGGCTTTAAGCATTTAGGGGGAACAA  800

seq1  TGTTCATTTGATCTTCAATTTTAAAACTTCTAAACTTTATTTAGCATGGT  850
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTTCATTTGATCTTCAATTTT-AAACTTCTAAACTTTATTTAGCATGGT  849

seq1  GTTCCGTTGCTATGTTTGGTTTTAGACACAAATATACTTGAGCCACACAG  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTTCCGTTGCTATGTTTGGTTTTAGACACAAATATACTTGAG-CACACAG  898

seq1  ACAGGAAATGTGGGAAGCTCTGGTATTGATTTCAGGAGATTTCTTGTCTT  950
      ||||||||||| ||||||||||||| |||||||| ||||||   |||| |
seq2  ACAGGAAATGT-GGAAGCTCTGGTA-TGATTTCA-GAGATT--CTGTC-T  942

seq1  GTGTATAAGTAGAAAAATGTCTCCAAACTACAAAAGAATCTATTTGATAA  1000
      |||||||||||| ||||||||||| ||||||||||||||||| |||||||
seq2  GTGTATAAGTAG-AAAATGTCTCC-AACTACAAAAGAATCTA-TTGATAA  989

seq1  CAGTGGCCGGAAATGTAATTTATCAAGATTTATGATATTTAACTAACTCC  1050
      |||||  | ||||||||  ||||| ||| |||||  |||| ||| |||||
seq2  CAGTG--CCGAAATGTA--TTATC-AGA-TTATG--ATTTTACT-ACTCC  1030

seq1  TGAAGACTTTCAAAGAGTATTGCAACGAAAGCCCACTGAACTTGGTGCTT  1100
      || ||||||   ||||||| ||| |||||   ||||||||||| |||| |
seq2  TG-AGACTT--CAAGAGTA-TGC-ACGAA--GCCACTGAACTT-GTGC-T  1071

seq1  CATGTAGAAGCTTATGCTAAGATGCACAGACTC-CTCACTTGGGCACA  1147
      |||||   |||||||||  |||||| ||||||| ||||| ||||||||
seq2  CATGT--GAGCTTATGC-CAGATGC-CAGACTCTCTCAC-TGGGCACA  1114

seq1: chrY_573321_573550
seq2: B6Ng01-063K16.g_227_459

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      |||||||||||||||||||||||||||||| | ||||||||||||| |||
seq2  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGATGAAGGGATCTGCAATCCT  50

seq1  ATAGATGGAACAACAATATGAA-TAACCAGTA--TCCACAGAGCTCATGT  97
      |||| ||||||||||||||||| |||||| ||   || | |||||| |||
seq2  ATAGGTGGAACAACAATATGAACTAACCAATACTCCCCCGGAGCTCTTGT  100

seq1  CTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAA  147
      ||||||||||||||| |||||||||||||||| | |||||||| ||| ||
seq2  CTCTAGCTGCATATGAATCAGAAGATGGCCTATTCGGCCATCAGTGGAAA  150

seq1  GAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAACA  197
      ||||||||| |||||||||||||||||||||||| |||||||||||||  
seq2  GAGAGGCCCATTGGTCTTGCAAACTTTATATGCCTCAGTACAGGGGAATG  200

seq1  CCAGGGCCAAGAAGTGGGAGAAGGTGGGTAGGG  230
      ||||||||||||||| ||||  |||||| ||||
seq2  CCAGGGCCAAGAAGTAGGAGTGGGTGGGAAGGG  233