BAC Information

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BAC

Clone NameB6Ng01-064O22
ChromosomeY (Build37)6 (Build37)
Map Location 573,321 - 573,35834,491,030 - 34,492,179
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064O22.bB6Ng01-064O22.g
ACCDH884573DH884574
length4991,116
definitionDH884573|Mus musculus domesticus DNA, BAC clone: B6Ng01-064O22, 5' end.DH884574|Mus musculus domesticus DNA, BAC clone: B6Ng01-064O22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,358)(34,491,030 - 34,492,179)
sequence
gaattcatgaagttcttaggcaaatgaatggaattagaaaatatcatcct
gagttaggtagcccaatcacaaaagaacacacatggtatgtactcactga
taagtggataattagcccagaagttctgaatacccaatgcacagaccaca
tgaagctcaagaagaaggaagaccacaatgtgaatactttggtccttttt
agaagggggatcaaaatacccatgagaggagatacagagacaatgtttgg
agcagaaactgaaggaaaggccatccagtgactgtcccacctggggaccc
atcccatatacagttaccaaactcagacactattgtggatgccaacaagt
acttgctgacaggagcctgatatagctgtcacccgagaggctttgccagt
gcctgacaaatacagaggtgaatgctcaaagccatccaatgtactgatca
cagtgtctccaatggaggagctagagaaaggacccaaggagctgaaggg
gaattcaatgatttttaaaaagtagccgaggagaacaacagtacagaatt
ttatactttgtgtggttcctgacatagccagtaaataatatgcttaggca
atggctaaaataaaaagcagttgtagattattcatagttaacaacccaga
atacaattatctttggttccttcagtgcatgtatagactctaagtggatg
tttttcttgtaacagaaagaaagaaagctcatgaataattctggagctcc
cagaaggagcgctcttctttggataacccagtgagacccgttctaaagtt
agtcctccgtaaagagcaaaaaaccaaaacttgaatgcctgtgaatgcac
tctgaagcccgaggttctgcgttgaaaccatttctaacagcccttccctc
aggaagaacaccatatccaaaggacggtgtaagcacaggcagttgataga
gccaagcctcacttgaagctctgtccaaagcacttcacatggattacaac
cctccagccactcatccgtcttatgaagtagatactgtgattattattat
ctccatttcacagagggagagggatgagaagtatcctgtccctgttctct
ctgggttctaagtctgggcaggccgactcccagtccccaattgtaaacca
ctaaactacccagctgtaaagtgtgtattcatagttatgtcagacttcct
tattaatgcgaaagaaaaggacttctatataagcatgtatctaatatggg
aacagaaactagttcccaaattcaaataaacaaataaacccagttggtca
aggacttgctctgggtttagaaacacaccaatggcagcctaactggtttt
agttgaagagggttaccgtccagatgcccttgccgttagaagactggctg
tgacgagggaattcctttttcttagacccgggagctgcatctctgccata
tcacacactgcacagtttaattgatgcttgtagatgaagctcatgtctag
caattttgcatctgtgacttagatttttttttctgatcatcttgtcctgt
acatgatgtccaacttcatgaacaacttccaatgggcaatgtatggagac
ttgataggctgtggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573358
seq2: B6Ng01-064O22.b_508_545

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGG  38
      ||||||||||||||||||| |||||||||||| |||||
seq2  ATGGAGGAGCTAGAGAAAGGACCCAAGGAGCTGAAGGG  38

seq1: chr6_34491030_34492179
seq2: B6Ng01-064O22.g_69_1184

seq1  GAATTCAATGATTTTTAAAAAGTAGCCGAGGAGAACAACAGTACAGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGATTTTTAAAAAGTAGCCGAGGAGAACAACAGTACAGAATT  50

seq1  TTATACTTTGTGTGGTTCCTGACATAGCCAGTAAATAATATGCTTAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTTTGTGTGGTTCCTGACATAGCCAGTAAATAATATGCTTAGGCA  100

seq1  ATGGCTAAAATAAAAAGCAGTTGTAGATTATTCATAGTTAACAACCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAAAATAAAAAGCAGTTGTAGATTATTCATAGTTAACAACCCAGA  150

seq1  ATACAATTATCTTTGGTTCCTTCAGTGCATGTATAGACTCTAAGTGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATTATCTTTGGTTCCTTCAGTGCATGTATAGACTCTAAGTGGATG  200

seq1  TTTTTCTTGTAACAGAAAGAAAGAAAGCTCATGAATAATTCTGGAGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTGTAACAGAAAGAAAGAAAGCTCATGAATAATTCTGGAGCTCC  250

seq1  CAGAAGGAGCGCTCTTCTTTGGATAACCCAGTGAGACCCGTTCTAAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGAGCGCTCTTCTTTGGATAACCCAGTGAGACCCGTTCTAAAGTT  300

seq1  AGTCCTCCGTAAAGAGCAAAAAACCAAAACTTGAATGCCTGTGAATGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCCGTAAAGAGCAAAAAACCAAAACTTGAATGCCTGTGAATGCAC  350

seq1  TCTGAAGCCCGAGGTTCTGCGTTGAAACCATTTCTAACAGCCCTTCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGCCCGAGGTTCTGCGTTGAAACCATTTCTAACAGCCCTTCCCTC  400

seq1  AGGAAGAACACCATATCCAAAGGACGGTGTAAGCACAGGCAGTTGATAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAACACCATATCCAAAGGACGGTGTAAGCACAGGCAGTTGATAGA  450

seq1  GCCAAGCCTCACTTGAAGCTCTGTCCAAAGCACTTCACATGGATTACAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCCTCACTTGAAGCTCTGTCCAAAGCACTTCACATGGATTACAAC  500

seq1  CCTCCAGCCACTCATCCGTCTTATGAAGTAGATACTGTGATTATTATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGCCACTCATCCGTCTTATGAAGTAGATACTGTGATTATTATTAT  550

seq1  CTCCATTTCACAGAGGGAGAGGGATGAGAAGTATCCTGTCCCTGTTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTTCACAGAGGGAGAGGGATGAGAAGTATCCTGTCCCTGTTCTCT  600

seq1  CTGGGTTCTAAGTCTGGGCAGGCCGACTCCCAGTCCCCAATTGTAAACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTCTAAGTCTGGGCAGGCCGACTCCCAGTCCCCAATTGTAAACCA  650

seq1  CTAAACTACCCAGCTGTAAAGTGTGTATTCATAGTTATGTCAGACTTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTACCCAGCTGTAAAGTGTGTATTCATAGTTATGTCAGACTTCCT  700

seq1  TATTAATGCGAAAGAAAAGGACTTCTATATAAGCATGTATCTAATATGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATGCGAAAGAAAAGGACTTCTATATAAGCATGTATCTAATATGGG  750

seq1  AACAGAAACTAGTTCCCAAATTCAAATAAACAAATAAACCCAGTTGGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAACTAGTTCCCAAATTCAAATAAACAAATAAACCCAGTTGGTCA  800

seq1  AGGACTTGCTCTGGGTTTAGAAACACACCAATGGCAGCCTAACTGGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTGCTCTGGGTTTAGAAACACACCAATGGCAGCCTAACTGGTTTT  850

seq1  AAGTTGAAGAGGGTTACCGTCCAAGATGCCCTTGCCGTTAGAAGACTGGC  900
       ||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  -AGTTGAAGAGGGTTACCGTCC-AGATGCCCTTGCCGTTAGAAGACTGGC  898

seq1  TGTGACGAGGGAATTCCTTTATCTTAGACCCGGGAAGCTGGCATCTTCTG  950
      |||||||||||||||||||| ||||||||||||| |||| ||||| ||||
seq2  TGTGACGAGGGAATTCCTTTTTCTTAGACCCGGG-AGCT-GCATC-TCTG  945

seq1  CCAATATTCACACACTGCCACAGTTTAATTTGATGCTTTGTAAGGATGAA  1000
      || ||| |||||||||| |||||||||| ||||||| |||||  |||| |
seq2  CC-ATA-TCACACACTG-CACAGTTTAA-TTGATGC-TTGTA--GATG-A  987

seq1  AGCTCATGTCCTTAGCAATTTTTGGCAATCTGTGGACTTTTAGATTTTTT  1050
      ||||||||||  ||||||||||  || |||||| |||  ||||| |||||
seq2  AGCTCATGTC--TAGCAATTTT--GC-ATCTGT-GAC--TTAGA-TTTTT  1028

seq1  TTTTCTGATCATCTTGTCACTGTTACATAGATGTCGCACCTACATGAACA  1100
      |||||||||||||||||| ||| ||||| |||||| || || ||||||||
seq2  TTTTCTGATCATCTTGTC-CTG-TACAT-GATGTC-CAACTTCATGAACA  1074

seq1  ACACTTCCCAAATGGGCCATTGTTAAATGAAAGACTTGATAGGC-CTGGT  1149
        ||||||  |||||| || |||   |||  |||||||||||||  ||||
seq2  --ACTTCC--AATGGG-CAATGT---ATG-GAGACTTGATAGGCTGTGGT  1115

seq1  G  1150
      |
seq2  G  1116