BAC Information

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BAC

Clone NameB6Ng01-064P12
Chromosome8 (Build37)Y (Build37)
Map Location 38,922,878 - 38,923,539573,321 - 573,401
singlet/doubletsingletsinglet
Overlap geneSgcz
Upstream geneA730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064P12.bB6Ng01-064P12.g
ACCDH884599DH884600
length676481
definitionDH884599|Mus musculus domesticus DNA, BAC clone: B6Ng01-064P12, 5' end.DH884600|Mus musculus domesticus DNA, BAC clone: B6Ng01-064P12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,922,878 - 38,923,539)(573,321 - 573,401)
sequence
gaattctttttattttccagatattgctagttcttcaaagaaaatatttc
aatatttcttgacatttcaatctaaacaatgtttattaaaaaaaaataga
ggcctcaccaataccactatgttcaaaaagatggatcggccttgtttttt
cttatttctccttctaaataaaacaaaaattcttggacattatataaaag
aaataagagaaaggtgaagttaaggccaagtggcttgcttgcctctcaga
ggcaagaagagtgaaaaagaaagacaagcaggcagagtgagtgcctcagc
tgggtttgccttttcccctcatacattctccacatggagataaagaaggt
ataaacctggagacatgaaatgatttagaaaaaacagaaaagaagaaaca
atgaaaagttctagaaataaaatttaggccactaacccatcacttcagtg
tgaattcacaggcacccacttcattgctccagcaatagtggagaacagat
cccagcttccacacactacagagtaatgagacaatcagtatgaccctgag
tgatgttagcagagcgctctcctctctctctctctctctctgtctctctc
tctctctctctctttctctctctctctctctctctctctctcactctcgc
tgtctagatctctatcatactctctc
gaattctttgtttagcgttgagccccatgttttaatgggattatttggtt
ttctggagtccaccttcttcagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggcct
ttttgtcttattgacggtgtcctttgccttacagaagttttgcaatttta
tgaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctattcaggaatttccccctgttcccatatcttcgaggcttttccccact
ttctcctctatagctgtctcttgtgagactatgtcagggcctagcaaaga
cagaattcgatgctcacagtcagctattggatggatcacagggccaccaa
tggaggagctagagaatgtatccaaggggctaaagggatctgcaacccta
taggtggaacaacaatatgaactaaccagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_38922878_38923539
seq2: B6Ng01-064P12.b_48_723

seq1  GAATTCTTTTTATTTTCCAGATATTGCTAGTTCTTCAAAGAAAATATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTATTTTCCAGATATTGCTAGTTCTTCAAAGAAAATATTTC  50

seq1  AATATTTCTTGACATTTCAATCTAAACAATGTTTATTAAAAAAAAATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCTTGACATTTCAATCTAAACAATGTTTATTAAAAAAAAATAGA  100

seq1  GGCCTCACCAATACCACTATGTTCAAAAAGATGGATCGGCCTTGTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCACCAATACCACTATGTTCAAAAAGATGGATCGGCCTTGTTTTTT  150

seq1  CTTATTTCTCCTTCTAAATAAAACAAAAATTCTTGGACATTATATAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTCTCCTTCTAAATAAAACAAAAATTCTTGGACATTATATAAAAG  200

seq1  AAATAAGAGAAAGGTGAAGTTAAGGCCAAGTGGCTTGCTTGCCTCTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAGAAAGGTGAAGTTAAGGCCAAGTGGCTTGCTTGCCTCTCAGA  250

seq1  GGCAAGAAGAGTGAAAAAGAAAGACAAGCAGGCAGAGTGAGTGCCTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGAAGAGTGAAAAAGAAAGACAAGCAGGCAGAGTGAGTGCCTCAGC  300

seq1  TGGGTTTGCCTTTTCCCCTCATACATTCTCCACATGGAGATAAAGAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTGCCTTTTCCCCTCATACATTCTCCACATGGAGATAAAGAAGGT  350

seq1  ATAAACCTGGAGACATGAAATGATTTAGAAAAAACAGAAAAGAAGAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCTGGAGACATGAAATGATTTAGAAAAAACAGAAAAGAAGAAACA  400

seq1  ATGAAAAGTTCTAGAAATAAAATTTAGGCCACTAACCCATCACTTCAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGTTCTAGAAATAAAATTTAGGCCACTAACCCATCACTTCAGTG  450

seq1  TGAATTCACAGGCACCCACTTCATTGCTCCAGCAATAGTGGAGAACAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCACAGGCACCCACTTCATTGCTCCAGCAATAGTGGAGAACAGAT  500

seq1  CCCAGCTTCCACACACTACAGAGTAATGAGACAATCAGTATGACCCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTTCCACACACTACAGAGTAATGAGACAATCAGTATGACCCTGAG  550

seq1  TGATGTTAGCAGAGCGCTCTCCTCTCTCTCTCTCTCTCTCTGTCTCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTAGCAGAGCGCTCTCCTCTCTCTCTCTCTCTCTCTGTCTCTCTC  600

seq1  TCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  650
      |||||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  TCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCTCGC  650

seq1  TGTCT--------------CTCTCTC  662
      |||||              |||||||
seq2  TGTCTAGATCTCTATCATACTCTCTC  676

seq1: chrY_573321_573401
seq2: B6Ng01-064P12.g_468_549

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      ||||||||||||||||| ||| |||||| ||||||||||||||||| |||
seq2  ATGGAGGAGCTAGAGAATGTATCCAAGGGGCTAAAGGGATCTGCAACCCT  50

seq1  ATAGATGGAACAACAATATGAA-TAACCAGTA  81
      |||| ||||||||||||||||| |||||||||
seq2  ATAGGTGGAACAACAATATGAACTAACCAGTA  82