BAC Information

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BAC

Clone NameB6Ng01-065O12
ChromosomeY (Build37)1 (Build37)
Map Location 573,321 - 573,35852,888,725 - 52,889,805
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065O12.bB6Ng01-065O12.g
ACCDH885246DH885247
length811,082
definitionDH885246|Mus musculus domesticus DNA, BAC clone: B6Ng01-065O12, 5' end.DH885247|Mus musculus domesticus DNA, BAC clone: B6Ng01-065O12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,358)(52,888,725 - 52,889,805)
sequence
tgtgtatctccaatcatccattggatggagcacaaggtccccaatgaagg
agctagagaaagtacccaaggagctgaaggg
gaattcaccaatattctgattctctaatcagcaaaactgagaatgctgtt
ttacataagtagaaaataagatgacagaagcatgtttcagaattactgaa
aatcctcttctcattgcaggtcattgaaacgaattaaaaaatctgtttaa
aggctgttttatgaaactcaaggtggcaattcaaacagtgatttagaaaa
atcaagcattcctagcaatacacagatgtactaagttgttactttcatgc
tgagaaataatggtagaaaatagttgaaatatttttccataattaaacta
ttatatttttgtaagaacagaaacatttgtatgcacagcaagaacactat
aatttataccccaatattctcaagtctgagctgaggcactgtgaaatcat
gagctttcattcaggtgagcatcatcatggattttattttgaattaattt
ttgatctgtgcatttggaaaatttttattgttccaattccttttctgacc
cccatattaaattatgtcatttcataggggttgtgacagagaatattaca
caaagtttggctttaaggtacctcattatttaggtagtgctgcggagtcc
atggtaagtatatttgggcattcccctttacccctgatattccagagcct
aaaataatattacttttcagaataactataagtagaaaaatatttgctct
tgtatgcttttcacagactttttgtagaatgtactagcagtgaaatgttt
gcatagtgtgattaacatagtgtttcttctaactcctgtgagtagggaaa
aatattggacaataagaaagagcattcaatagactctggtcatgtttttt
tttttttaactcacctcacatattttcctttttaactgtcatgtatttta
tgttttattaattttttgggcctttccctactcttccaaagattgggaag
catagttaatcatctaactgacctatacaggttaaattttatcttggaaa
tacaaatgcgccattggatggcacctacaggtctaacaagttaaaggagg
cttgtgggccactgactgaattcaagatgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573358
seq2: B6Ng01-065O12.b_98_135

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGG  38
      ||| |||||||||||||||||||||||||||| |||||
seq2  ATGAAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGG  38

seq1: chr1_52888725_52889805
seq2: B6Ng01-065O12.g_70_1151

seq1  GAATTCACCAATATTCTGATTCTCTAATCAGCAAAACTGAGAATGCTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAATATTCTGATTCTCTAATCAGCAAAACTGAGAATGCTGTT  50

seq1  TTACATAAGTAGAAAATAAGATGACAGAAGCATGTTTCAGAATTACTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAAGTAGAAAATAAGATGACAGAAGCATGTTTCAGAATTACTGAA  100

seq1  AATCCTCTTCTCATTGCAGGTCATTGAAACGAATTAAAAAATCTGTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCTTCTCATTGCAGGTCATTGAAACGAATTAAAAAATCTGTTTAA  150

seq1  AGGCTGTTTTATGAAACTCAAGGTGGCAATTCAAACAGTGATTTAGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTTTTATGAAACTCAAGGTGGCAATTCAAACAGTGATTTAGAAAA  200

seq1  ATCAAGCATTCCTAGCAATACACAGATGTACTAAGTTGTTACTTTCATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCATTCCTAGCAATACACAGATGTACTAAGTTGTTACTTTCATGC  250

seq1  TGAGAAATAATGGTAGAAAATAGTTGAAATATTTTTCCATAATTAAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATAATGGTAGAAAATAGTTGAAATATTTTTCCATAATTAAACTA  300

seq1  TTATATTTTTGTAAGAACAGAAACATTTGTATGCACAGCAAGAACACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTTTGTAAGAACAGAAACATTTGTATGCACAGCAAGAACACTAT  350

seq1  AATTTATACCCCAATATTCTCAAGTCTGAGCTGAGGCACTGTGAAATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATACCCCAATATTCTCAAGTCTGAGCTGAGGCACTGTGAAATCAT  400

seq1  GAGCTTTCATTCAGGTGAGCATCATCATGGATTTTATTTTGAATTAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTCATTCAGGTGAGCATCATCATGGATTTTATTTTGAATTAATTT  450

seq1  TTGATCTGTGCATTTGGAAAATTTTTATTGTTCCAATTCCTTTTCTGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTGTGCATTTGGAAAATTTTTATTGTTCCAATTCCTTTTCTGACC  500

seq1  CCCATATTAAATTATGTCATTTCATAGGGGTTGTGACAGAGAATATTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATTAAATTATGTCATTTCATAGGGGTTGTGACAGAGAATATTACA  550

seq1  CAAAGTTTGGCTTTAAGGTACCTCATTATTTAGGTAGTGCTGCGGAGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTTGGCTTTAAGGTACCTCATTATTTAGGTAGTGCTGCGGAGTCC  600

seq1  ATGGTAAGTATATTTGGGCATTCCCCTTTACCCCTGATATTCCAGAGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAAGTATATTTGGGCATTCCCCTTTACCCCTGATATTCCAGAGCCT  650

seq1  AAAATAATATTACTTTTCAGAATAACTATAAGTAG-AAAATATTTGCTCT  699
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAATAATATTACTTTTCAGAATAACTATAAGTAGAAAAATATTTGCTCT  700

seq1  TGTATGCTTTTCACAGACTTTTTGTAGAATGTACTAGCAGTGAAATGTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCTTTTCACAGACTTTTTGTAGAATGTACTAGCAGTGAAATGTTT  750

seq1  GCATAGTGTGATTAACATAGTGTTTCTTCTAACTCCTGTGAGTAGGGAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTGTGATTAACATAGTGTTTCTTCTAACTCCTGTGAGTAGGGAAA  800

seq1  AATATTGGACAATAAGAAAGAGCATTCAATAGACTCTGGTCATGTTTTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGGACAATAAGAAAGAGCATTCAATAGACTCTGGTCATGTTTTTT  850

seq1  TTTTTTTAACTCACCTCACATATTTTCTTTTTTAACTGTCATGTATTTTA  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTTTTTAACTCACCTCACATATTTTCCTTTTTAACTGTCATGTATTTTA  900

seq1  TGTTTTATTAATTTTTTTGGCCTTTCCCTACTCTTCCAAAGATTGTGAAG  949
      ||||||||||||||||| ||||||||||||||||||||||||||| ||||
seq2  TGTTTTATTAATTTTTTGGGCCTTTCCCTACTCTTCCAAAGATTGGGAAG  950

seq1  CATAGTTAATCATCTAACTGACCTATACA-GTTAAATTTTATCTTGAAAA  998
      ||||||||||||||||||||||||||||| |||||||||||||||| |||
seq2  CATAGTTAATCATCTAACTGACCTATACAGGTTAAATTTTATCTTGGAAA  1000

seq1  TAACAAATGCAGCCATTGGAT-GCATCTACAGGTCTAACAAGTTAAAGGA  1047
      | |||||||| |||||||||| ||| ||||||||||||||||||||||||
seq2  T-ACAAATGC-GCCATTGGATGGCACCTACAGGTCTAACAAGTTAAAGGA  1048

seq1  GGCTTGTGGGCCACTGACTGACATCAAGATGAGA  1081
      |||||||||||||||||||||  |||||||||||
seq2  GGCTTGTGGGCCACTGACTGAATTCAAGATGAGA  1082