BAC Information

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BAC

Clone NameB6Ng01-067D20
Chromosome2 (Build37)Y (Build37)
Map Location 51,434,932 - 51,436,1361,870,346 - 1,870,497
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC227885, Rnd3, LOC666802, LOC666810
Downstream geneLOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1, Neb, LOC100041670, Arl5a, Cacnb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067D20.bB6Ng01-067D20.g
ACCDH886192DH886193
length1,190494
definitionDH886192|Mus musculus domesticus DNA, BAC clone: B6Ng01-067D20, 5' end.DH886193|Mus musculus domesticus DNA, BAC clone: B6Ng01-067D20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(51,434,932 - 51,436,136)(1,870,346 - 1,870,497)
sequence
gaattccacattcaagaagcaagcctagaagtgtagaattgtactaatcc
caacaccagttttatttctgtattggagggaagggaacatctgtttatgg
ctggaaattagaaaccccactttggactgtaaaagtccaatttagagagc
aaatcatttcttaaacttacctgcttatctctgcccccagtccccttccc
aaagagaaatcaaggaactccaggaaagtcgatgtgttttatggttctct
caagcatatctcacacacacacacaaatgattacttctatgattgctatt
caccaattcctgctgtagatttgattttaaaaattaggtatagcgtaagt
attagttactcttctgttgctgtgataaaataccatgaaaaagcagctta
aggaagagaggttattttgccttctggttctagaaggggagaccgtaatg
gtggggtgaagcatgagagctggtggcatgagcaggaggcctagaaagca
tagcccattaggatacagaagcagagagcaggaactgaaagtgtccaaag
cctgcccacagtgacatgtttcctccagctaggtgtccggtcctaagagc
atcatagcttatcatatccaaacagcactgtcaaagggagtccaactcct
caaatacccgagccaatgagagacattctcgtgccaaccagtacagtgca
gtcaagcagaaaaccattagacgtggagttatttggtttctctaactgta
cataaaacaaataacaaacaaagcaaaagaacaatagcagttgttgtcat
cataaggaaaagaaaaaactggaaagagaaaacatgcctcagatttcaaa
tcaaaataaatttcagttttctattttttttgatgtttgtatatttttaa
accaaattcactactttatttttaatgtatgcatttgtacatacataaag
gtatgtcatgtgaaaatacatttctttctataatcttaatcagagcaaaa
ttttaattaatatgaaactcatttttttcacaaggattttagctataatg
atacaatatacattttatcatattatatgtaatattcaatatatatacat
atttttttacatcatcaatatttatttatgacctatatcaaacatcataa
tcgagatttttatataccatatttttatattacattacat
tttgttcagttctgagccccattttttaatggggttatttgattttctga
agtccaccttcttgagttctttatatatgttggatattagtcccctatct
gatttaggataggtaaagatcctttcccaatctgttggtggtctttttgt
cctattgacggtgtcttttgccttgccataatcagcttccaaatgctgac
accattgcatacactagcaagattatgctgaaaggaccctgatatagctg
tctcttgtcagagtatgcctgggcctagcaaacatagaagtggatgctca
cagtcggctattggatggatcacatggcccccaatgaaggagctagagaa
agtaccaaagaagctaaagggatctgcaaccctataggtggaacaacatt
atgaactaaccagtaccccggagctcttgactctagctgcatatgcatca
aaagatggcctagtcggccatcactggaaagagaggcccattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_51434932_51436136
seq2: B6Ng01-067D20.b_45_1234

seq1  GAATTCCACATTCAAGAAGCAAGCCTAGAAGTGTAGAATTGTACTAATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATTCAAGAAGCAAGCCTAGAAGTGTAGAATTGTACTAATCC  50

seq1  CAACACCAGTTTTATTTCTGTATTGGAGGGAAGGGAACATCTGTTTATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCAGTTTTATTTCTGTATTGGAGGGAAGGGAACATCTGTTTATGG  100

seq1  CTGGAAATTAGAAACCCCACTTTGGACTGTAAAAGTCCAATTTAGAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAATTAGAAACCCCACTTTGGACTGTAAAAGTCCAATTTAGAGAGC  150

seq1  AAATCATTTCTTAAACTTACCTGCTTATCTCTGCCCCCAGTCCCCTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTTCTTAAACTTACCTGCTTATCTCTGCCCCCAGTCCCCTTCCC  200

seq1  AAAGAGAAATCAAGGAACTCCAGGAAAGTCGATGTGTTTTATGGTTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAATCAAGGAACTCCAGGAAAGTCGATGTGTTTTATGGTTCTCT  250

seq1  CAAGCATATCTCACACACACACACAAATGATTACTTCTATGATTGCTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATATCTCACACACACACACAAATGATTACTTCTATGATTGCTATT  300

seq1  CACCAATTCCTGCTGTAGATTTGATTTTAAAAATTAGGTATAGCGTAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATTCCTGCTGTAGATTTGATTTTAAAAATTAGGTATAGCGTAAGT  350

seq1  ATTAGTTACTCTTCTGTTGCTGTGATAAAATACCATGAAAAAGCAGCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTACTCTTCTGTTGCTGTGATAAAATACCATGAAAAAGCAGCTTA  400

seq1  AGGAAGAGAGGTTATTTTGCCTTCTGGTTCTAGAAGGGGAGACCGTAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGAGGTTATTTTGCCTTCTGGTTCTAGAAGGGGAGACCGTAATG  450

seq1  GTGGGGTGAAGCATGAGAGCTGGTGGCATGAGCAGGAGGCCTAGAAAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTGAAGCATGAGAGCTGGTGGCATGAGCAGGAGGCCTAGAAAGCA  500

seq1  TAGCCCATTAGGATACAGAAGCAGAGAGCAGGAACTGAAAGTGTCCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCATTAGGATACAGAAGCAGAGAGCAGGAACTGAAAGTGTCCAAAG  550

seq1  CCTGCCCACAGTGACATGTTTCCTCCAGCTAGGTGTCCGGTCCTAAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCACAGTGACATGTTTCCTCCAGCTAGGTGTCCGGTCCTAAGAGC  600

seq1  ATCATAGCTTATCATATCCAAACAGCACTGTCAAAGGGAGTCCAACTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGCTTATCATATCCAAACAGCACTGTCAAAGGGAGTCCAACTCCT  650

seq1  CAAATACCCGAGCCAATGAGAGACATTCTCGTGCCAACCAGTACAGTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACCCGAGCCAATGAGAGACATTCTCGTGCCAACCAGTACAGTGCA  700

seq1  GTCAAGCAGAAAACCATTAGACGTGGAGTTATTTGGTTTCTCTAACTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGCAGAAAACCATTAGACGTGGAGTTATTTGGTTTCTCTAACTGTA  750

seq1  CATAAAACAAATAACAAACAAAGCAAAAGAACAATAGCAGTTGTTGTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAACAAATAACAAACAAAGCAAAAGAACAATAGCAGTTGTTGTCAT  800

seq1  CATAAGGAAAAGAAAAAACTGGAAAGAGAAAACATGCCTCAGATTTCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGAAAAGAAAAAACTGGAAAGAGAAAACATGCCTCAGATTTCAAA  850

seq1  TCAAAATAAATTTCAGTTTTCTATTTTTTTTGATGTTTGTATATTTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATAAATTTCAGTTTTCTATTTTTTTTGATGTTTGTATATTTTTAA  900

seq1  ACCAAATTCACTACTTTATTTTTAATGTATGCATTTGTACATACATAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATTCACTACTTTATTTTTAATGTATGCATTTGTACATACATAAAG  950

seq1  GTATGTCATGTGAAAATACATTTCTTTCTATAATCTTAATCAAGGAGCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||  ||||||
seq2  GTATGTCATGTGAAAATACATTTCTTTCTATAATCTTAATCA--GAGCAA  998

seq1  AATTTTATATAATATGAAACTCATTTTTATTCACAAGGGATTTTTAGCTA  1050
      |||||||  ||||||||||||||||||| |||||||||   |||||||||
seq2  AATTTTAATTAATATGAAACTCATTTTT-TTCACAAGG--ATTTTAGCTA  1045

seq1  TAATGATACAATATTACATTTTATTCATATTATATGTTATATATCATATA  1100
      ||||||||||||| ||||||||| ||||||||||||| |||| ||| |||
seq2  TAATGATACAATA-TACATTTTA-TCATATTATATGTAATAT-TCA-ATA  1091

seq1  TATTATACATTATATTTTATACATCATCATATATTATATTATGTACTATA  1150
      || |||||| ||| |||| |||||||||| |||||   |||||  |  ||
seq2  TA-TATACA-TAT-TTTTTTACATCATCA-ATATTTATTTATGACC--TA  1135

seq1  TATCATACATCATATATC-AGA-TTTTATATTACATATATTTTATATTAC  1198
      ||||| |||||||| ||| ||| ||||||||  ||||| |||||||||||
seq2  TATCAAACATCATA-ATCGAGATTTTTATATACCATAT-TTTTATATTAC  1183

seq1  ATTACAT  1205
      |||||||
seq2  ATTACAT  1190

seq1: chrY_1870346_1870497
seq2: B6Ng01-067D20.g_417_568

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||||| ||| |||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGTACCAAAGAAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||||| |||||| |||||||||||||| |||||||
seq2  ACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150

seq1  GG  152
      ||
seq2  GG  152