BAC Information

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BAC

Clone NameB6Ng01-067M06
Chromosome5 (Build37)Y (Build37)
Map Location 22,377,918 - 22,379,061573,321 - 573,370
singlet/doubletsingletsinglet
Overlap geneLhfpl3
Upstream geneReln, Dnaja1-ps, LOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174
Downstream geneEG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2, Pus7, Rint1, 4933427G23Rik, Tomm7, LOC671410
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067M06.bB6Ng01-067M06.g
ACCDH886550DH886551
length1,132500
definitionDH886550|Mus musculus domesticus DNA, BAC clone: B6Ng01-067M06, 5' end.DH886551|Mus musculus domesticus DNA, BAC clone: B6Ng01-067M06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(22,377,918 - 22,379,061)(573,321 - 573,370)
sequence
gaattcattgtttttaatagctgagtagtactctattgtataaatgtacc
acattttctgtatccattcctctgttgagggacatctgggttctttccag
cttctggctattataaataaggctgctatgaacatagtggagcatgtgtc
cttattacatgttggaacatcttctgcacatatgcccaggagaggtattg
atggatcttctggtagtactatgtccagttttctgaggagctgccagact
gatttccagagtggttgtacaaggtttctgtaagcatagtggttaacagc
acagatttcaaggtggctgtttcatcacttgtaatgtgatgattgtaaca
cccttctcacgttgtcaatgagacttaaatgaaagatttatcaggactgt
gactagctcactgttaatattcagtcacaactgcagaggacatggcgggg
gaccacagaaaggaagccattttgctttgtttcaatggggacaacagaat
atttacccccatgtatctgcccccacattcctgtttcacaactctgtctt
gtcatcatcaatagctattgtgattgtcagagggctgctttgaactgaaa
tgcaaatgtggctcctgacttctgcagtttaggtagcagtcagtggaaac
atatgggaaacacattaaagccatatggcacattttacagaaagaactaa
gtctttgctcatgcattagcagtatgaaaaatgagaaaaatcataagaat
ctcatatttataaggaatcatggtctttcttcaagcacaaattatctttt
cagaaaaacctgttctgggacttgtgagaaactgcagtaaattcaataag
gaaacagactgaaataactacccagttatctatactgggaagcctgggtc
ctcactgtggtatgtaggttgcaaacaaatgtcttatttgagctatagaa
attagagatggatttaaaagggagagatgtagaaatcaaggagttacaaa
gacaaccaccattgaaagatgacagactggctgcgtgtgtctgggacaga
ctttagcagtgttgggacataagaccagccggtgtgtctgatcagttctt
tcgactctcccgagccataacctggtactttc
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttgggataggtaaagatcctttcccaatctattggtggcct
ttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcaattcttgatcttatagcacaagccattgctgtt
ctattcaggaattttccccctgtacccatatcttcgaggctttcccctac
tttctcctctataagtttcagtgtctttggttttatgtggaggtccttaa
tccacttagatttgatctctcttgtgagactatgtcggggcctagcaaac
acagaagtggatgatcacagtcagctattggatgggtcacacggccccta
atggaggagctagagaaattacccaaggagctaaagggaactgcaaccct

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_22377918_22379061
seq2: B6Ng01-067M06.b_48_1179 (reverse)

seq1  GAAAGTAAACCAGGTTATGGCTCGGGAGAGTCCGACAGAAACCTGAATCC  50
      ||||||  ||||||||||||||||||||||| ||| ||||  ||||   |
seq2  GAAAGT--ACCAGGTTATGGCTCGGGAGAGT-CGAAAGAA--CTGA--TC  43

seq1  AGACACACGGGCCTGGTC-TATGTTCCCAAACACTGCTAAAGTCTGTCCC  99
      |||||||| || |||||| |||||  || |||||||||||||||||||||
seq2  AGACACACCGG-CTGGTCTTATGT--CCCAACACTGCTAAAGTCTGTCCC  90

seq1  AGACACACGCAGCCATGTCTGTCCTTCTTTTCATTGGTGGTTTGTCTTTG  149
      ||||||||||||||| ||||||| |   ||||| |||||| |||||||||
seq2  AGACACACGCAGCCA-GTCTGTCAT--CTTTCAATGGTGG-TTGTCTTTG  136

seq1  TTAACTCCTTTGATTTCTACATCTCTTCCCTTTTAATCCATCTCTAATTT  199
       ||||||| ||||||||||||||||| || ||| ||||||||||||||||
seq2  -TAACTCC-TTGATTTCTACATCTCTCCCTTTTAAATCCATCTCTAATTT  184

seq1  CTATAGCTCAAATAAGACATTTGTTTGCAACCTACATACCACAGTGAGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCTCAAATAAGACATTTGTTTGCAACCTACATACCACAGTGAGGA  234

seq1  CCCAGGCTT-CCAGTATAGATAACTGGGTAGTTATTTCAGTCTGTTTCCT  298
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTTCCCAGTATAGATAACTGGGTAGTTATTTCAGTCTGTTTCCT  284

seq1  TATTGAATTTACTGCAGTTTCTCACAAGTCCCAGAACAGGTTTTTCTGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAATTTACTGCAGTTTCTCACAAGTCCCAGAACAGGTTTTTCTGAA  334

seq1  AAGATAATTTGTGCTTGAAG-AAGACCATGATTCCTTATAAATATGAGAT  397
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAGATAATTTGTGCTTGAAGAAAGACCATGATTCCTTATAAATATGAGAT  384

seq1  TCTTATGATTTTTCTCATTTTTCATACTGCTAATGCATGAGC-AAGACTT  446
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTTATGATTTTTCTCATTTTTCATACTGCTAATGCATGAGCAAAGACTT  434

seq1  AGTTCTTTCTGTAAAATGTGCCATATGGCTTTAATGTGTTTCCCATATGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTCTGTAAAATGTGCCATATGGCTTTAATGTGTTTCCCATATGT  484

seq1  TTCCACTGACTGCTACCTAAACTGCAGAAGTCAGGAGCCACATTTGCATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTGACTGCTACCTAAACTGCAGAAGTCAGGAGCCACATTTGCATT  534

seq1  TCAGTTCAAAGCAGCCCTCTGACAATCACAATAGCTATTGATGATGACAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCAAAGCAGCCCTCTGACAATCACAATAGCTATTGATGATGACAA  584

seq1  GACAGAGTTGTGAAACAGGAATGTGGGGGCAGATACATGGGGGTAAATAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGTTGTGAAACAGGAATGTGGGGGCAGATACATGGGGGTAAATAT  634

seq1  TCTGTTGTCCCCATTGAAACAAAGCAAAATGGCTTCCTTTCTGTGGTCCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGTCCCCATTGAAACAAAGCAAAATGGCTTCCTTTCTGTGGTCCC  684

seq1  CCGCCATGTCCTCTGCAGTTGTGACTGAATATTAACAGTGAGCTAGTCAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCATGTCCTCTGCAGTTGTGACTGAATATTAACAGTGAGCTAGTCAC  734

seq1  AGTCCTGATAAATCTTTCATTTAAGTCTCATTGACAACGTGAGAAGGGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGATAAATCTTTCATTTAAGTCTCATTGACAACGTGAGAAGGGTG  784

seq1  TTACAATCATCACATTACAAGTGATGAAACAGCCACCTTGAAATCTGTGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATCATCACATTACAAGTGATGAAACAGCCACCTTGAAATCTGTGC  834

seq1  TGTTAACCACTATGCTTACAGAAACCTTGTACAACCACTCTGGAAATCAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACCACTATGCTTACAGAAACCTTGTACAACCACTCTGGAAATCAG  884

seq1  TCTGGCAGCTCCTCAGAAAACTGGACATAGTACTACCAGAAGATCCATCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCAGCTCCTCAGAAAACTGGACATAGTACTACCAGAAGATCCATCA  934

seq1  ATACCTCTCCTGGGCATATGTGCAGAAGATGTTCCAACATGTAATAAGGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCTCCTGGGCATATGTGCAGAAGATGTTCCAACATGTAATAAGGA  984

seq1  CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT  1034

seq1  GGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGG  1084

seq1  TACATTTATACAATAGAGTACTACTCAGCTATTAAAAACAATGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTATACAATAGAGTACTACTCAGCTATTAAAAACAATGAATTC  1132

seq1: chrY_573321_573370
seq2: B6Ng01-067M06.g_515_564

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      |||||||||||||||||| |||||||||||||||||||| |||||| |||
seq2  ATGGAGGAGCTAGAGAAATTACCCAAGGAGCTAAAGGGAACTGCAACCCT  50