BAC Information

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BAC

Clone NameB6Ng01-073M22
ChromosomeY (Build37)
Map Location 1,911,152 - 2,047,961
singlet/doubletdoublet
Overlap geneSry, LOC100042840, LOC100042849
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1
Downstream geneLOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073M22.bB6Ng01-073M22.g
ACCDH890826DH890827
length1,059796
definitionDH890826|Mus musculus domesticus DNA, BAC clone: B6Ng01-073M22, 5' end.DH890827|Mus musculus domesticus DNA, BAC clone: B6Ng01-073M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(2,046,903 - 2,047,961)(1,911,152 - 1,911,947)
sequence
gaattctcttttgtctttgaaaactagctatgagtgatttttagtttata
gtagtgtttttgagatttttattcaacagatgctctttgttatcctgcat
caaaaattttagaaattgcatattctataggaaacacgatatatttttat
gattactttaaaggtaatttttctccatttttttcaagtaacttttaaaa
attgtttcctttatttgaggagggtaatagtataatttgtcatctttttt
tttctctttccacttcttccggtttttttttcattagtttatcacataca
tatacagtacatatacagtacatatatactcctaaatacataccaataca
gcttgctcagtgtgtataatgttacttgtatgtagtttttaagattgatt
attttgaattggacaatctacttacaagtgctgttcttccagcacggaaa
tgattttattctttgggctctcaacatgccattctgtattttaagcttta
ttgtgcagattgtaaaatactacaattctcttgtttctgtctcaattttt
ttcctttctgataaaacaaactggtatatatttccattaagaaagacatt
ctaaacctcatgtttgactcagtaaaaggtaatgtatgtaagttaaattt
ggttctgttgtctttttcagattttggatggaaaaagaattaaagtaaaa
caagccaggagaccatcatcacttgaaagtggtagcaagaagagaccacc
atccttttcaagaaccagaggtgcttcagaattctgaaatgtggaagagg
aggaagaagcagagcaagaagtggtcttcatgtgaagggaacttgggtaa
cttgtacatagtagaagcagtgtgactgataattagtaagataatataag
gtagaaacactacgacttttatttactttcctcatgagtagagcagttac
cttcaattagaaaaattaaaagcactgtatgattaatataagtaacagat
gccttattaaaaattgaatttaccccagatggtcattgcaaagaggttct
ttttaggat
gaattccaagtgaagtcagaggagtcagggggctgttcttccctctgcct
gtgctggttgggcaggggccaaggctgaccctcctttagaggaagaaggg
tgtgcggtggtgaggcctgtaagaaaaaagttctcatccaaacagagggc
ctctccaccaggtattgccacatggtgatgtatggcacttggtccaggtg
gccccaagtattcacccaaaaaatgatggggagatggaaagtcccctcct
cagatcataggtgggccactcattcctgcaaaagatggttagtttgtagg
gacaaccaagcagacccacgtcttctatgactctgtcaaagtccttaaaa
tggttcaggatcaggtccagtgcagtgctttatgcctttccatcctagga
attaaaaaagaaaaaaattgtacaagaggacaaaaagcacaaacaaaata
cacacaaacacaaaaggacattcccagaaaaccaaaaccaaaaccaaaag
gctatctcacatggtcttcctccctgctcatgggaggcccatagacccac
agccagttcaggattcagatgagaactagcaagttctcctgcttctggta
gggaatctgggagagtcttccattacccctggccaggtaactatgagtcg
gccttgatcctcttggccttctgattaaaacggaaacagaattaacggag
aaatagaaacatagatatggaaaagatgaaacaaaaccaggcacctggac
ttaccaatcagacaaagcctccactctcgggggttggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_2046903_2047961
seq2: B6Ng01-073M22.b_46_1104 (reverse)

seq1  ATCCT-AAAAGAACTCTTTTGCAATTGACACTCTGGTGTAAATTCAATTT  49
      ||||| ||||||||   ||||||| ||||  ||||| |||||||||||||
seq2  ATCCTAAAAAGAACCTCTTTGCAA-TGACCATCTGGGGTAAATTCAATTT  49

seq1  TTAATTAAGGCATCTGTTACTTATATTAATCATACAGTGCTTTTAATTTT  99
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAA-TAAGGCATCTGTTACTTATATTAATCATACAGTGCTTTTAATTTT  98

seq1  TCTAATTGAAGGTAACTGCTCTACTCATGA-GAATGTAAATAAAAGTCGT  148
      |||||||||||||||||||||||||||||| ||| |||||||||||||||
seq2  TCTAATTGAAGGTAACTGCTCTACTCATGAGGAAAGTAAATAAAAGTCGT  148

seq1  AGTGTTTCTA-CTTATATTATCTTACTAATTATCAGTCACACTGCTTCTA  197
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTCTACCTTATATTATCTTACTAATTATCAGTCACACTGCTTCTA  198

seq1  CTATGTAC-AGTTACCCAAGTTCCCTTCACATGAAGGACCACTTCTTGCT  246
      |||||||| |||||||||||||||||||||||||| ||||||||||||||
seq2  CTATGTACAAGTTACCCAAGTTCCCTTCACATGAA-GACCACTTCTTGCT  247

seq1  CTGCTTCTTCCTCCTCTTCCACATTTCAGAATTCTTGAAGCACCTCTGGT  296
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTGCTTCTTCCTCCTCTTCCACATTTCAGAATTC-TGAAGCACCTCTGGT  296

seq1  TCTTGAAAAGGATGGTGGTCTCTTCTTGCTACCACTTTCAAGTGATGATG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAAAGGATGGTGGTCTCTTCTTGCTACCACTTTCAAGTGATGATG  346

seq1  GTCTCCTGGCTTGTTTTACTTTAATTCTTTTTCCATCCAAAATCTGAAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTGGCTTGTTTTACTTTAATTCTTTTTCCATCCAAAATCTGAAAA  396

seq1  AGACAACAGAACCAAATTTAACTTACATACATTACCTTTTACTGAGTCAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACAGAACCAAATTTAACTTACATACATTACCTTTTACTGAGTCAA  446

seq1  ACATGAGGTTTAGAATGTCTTTCTTAATGGAAATATATACCAGTTTGTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGGTTTAGAATGTCTTTCTTAATGGAAATATATACCAGTTTGTTT  496

seq1  TATCAGAAAGGAAAAAAATTGAGACAGAAACAAGAGAATTGTAGTATTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGAAAGGAAAAAAATTGAGACAGAAACAAGAGAATTGTAGTATTTT  546

seq1  ACAATCTGCACAATAAAGCTTAAAATACAGAATGGCATGTTGAGAGCCCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTGCACAATAAAGCTTAAAATACAGAATGGCATGTTGAGAGCCCA  596

seq1  AAGAATAAAATCATTTCCGTGCTGGAAGAACAGCACTTGTAAGTAGATTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAAATCATTTCCGTGCTGGAAGAACAGCACTTGTAAGTAGATTG  646

seq1  TCCAATTCAAAATAATCAATCTTAAAAACTACATACAAGTAACATTATAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTCAAAATAATCAATCTTAAAAACTACATACAAGTAACATTATAC  696

seq1  ACACTGAGCAAGCTGTATTGGTATGTATTTAGGAGTATATATGTACTGTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAGCAAGCTGTATTGGTATGTATTTAGGAGTATATATGTACTGTA  746

seq1  TATGTACTGTATATGTATGTGATAAACTAATGAAAAAAAAACCGGAAGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACTGTATATGTATGTGATAAACTAATGAAAAAAAAACCGGAAGAA  796

seq1  GTGGAAAGAGAAAAAAAAAGATGACAAATTATACTATTACCCTCCTCAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAGAGAAAAAAAAAGATGACAAATTATACTATTACCCTCCTCAAA  846

seq1  TAAAGGAAACAATTTTTAAAAGTTACTTGAAAAAAATGGAGAAAAATTAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAAACAATTTTTAAAAGTTACTTGAAAAAAATGGAGAAAAATTAC  896

seq1  CTTTAAAGTAATCATAAAAATATATCGTGTTTCCTATAGAATATGCAATT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGTAATCATAAAAATATATCGTGTTTCCTATAGAATATGCAATT  946

seq1  TCTAAAATTTTTGATGCAGGATAACAAAGAGCATCTGTTGAATAAAAATC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATTTTTGATGCAGGATAACAAAGAGCATCTGTTGAATAAAAATC  996

seq1  TCAAAAACACTACTATAAACTAAAAATCACTCATAGCTAGTTTTCAAAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAACACTACTATAAACTAAAAATCACTCATAGCTAGTTTTCAAAGA  1046

seq1  CAAAAGAGAATTC  1059
      |||||||||||||
seq2  CAAAAGAGAATTC  1059

seq1: chrY_1911152_1911947
seq2: B6Ng01-073M22.g_68_863

seq1  GAATTCCAAGTGAAGTCAGAGGAGTCAGGGGGCTGTTCTTCCCTCTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTGAAGTCAGAGGAGTCAGGGGGCTGTTCTTCCCTCTGCCT  50

seq1  GTGCTGGTTGGGCAGGGGCCAAGGCTGACCCTCCTTTAGAGGAAGAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGTTGGGCAGGGGCCAAGGCTGACCCTCCTTTAGAGGAAGAAGGG  100

seq1  TGTGCGGTGGTGAGGCCTGTAAGAAAAAAGTTCTCATCCAAACAGAGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGGTGGTGAGGCCTGTAAGAAAAAAGTTCTCATCCAAACAGAGGGC  150

seq1  CTCTCCACCAGGTATTGCCACATGGTGATGTATGGCACTTGGTCCAGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCACCAGGTATTGCCACATGGTGATGTATGGCACTTGGTCCAGGTG  200

seq1  GCCCCAAGTATTCACCCAAAAAATGATGGGGAGATGGAAAGTCCCCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAAGTATTCACCCAAAAAATGATGGGGAGATGGAAAGTCCCCTCCT  250

seq1  CAGATCATAGGTGGGCCACTCATTCCTGCAAAAGATGGTTAGTTTGTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCATAGGTGGGCCACTCATTCCTGCAAAAGATGGTTAGTTTGTAGG  300

seq1  GACAACCAAGCAGACCCACGTCTTCTATGACTCTGTCAAAGTCCTTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCAAGCAGACCCACGTCTTCTATGACTCTGTCAAAGTCCTTAAAA  350

seq1  TGGTTCAGGATCAGGTCCAGTGCAGTGCTTTATGCCTTTCCATCCTAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCAGGATCAGGTCCAGTGCAGTGCTTTATGCCTTTCCATCCTAGGA  400

seq1  ATTAAAAAAGAAAAAAATTGTACAAGAGGACAAAAAGCACAAACAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAAGAAAAAAATTGTACAAGAGGACAAAAAGCACAAACAAAATA  450

seq1  CACACAAACACAAAAGGACATTCCCAGAAAACCAAAACCAAAACCAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAACACAAAAGGACATTCCCAGAAAACCAAAACCAAAACCAAAAG  500

seq1  GCTATCTCACATGGTCTTCCTCCCTGCTCATGGGAGGCCCATAGACCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTCACATGGTCTTCCTCCCTGCTCATGGGAGGCCCATAGACCCAC  550

seq1  AGCCAGTTCAGGATTCAGATGAGAACTAGCAAGTTCTCCTGCTTCTGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTTCAGGATTCAGATGAGAACTAGCAAGTTCTCCTGCTTCTGGTA  600

seq1  GGGAATCTGGGAGAGTCTTCCATTACCCCTGGCCAGGTAACTATGAGTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCTGGGAGAGTCTTCCATTACCCCTGGCCAGGTAACTATGAGTCG  650

seq1  GCCTTGATCCTCTTGGCCTTCTGATTAAAACGGAAACAGAATTAACGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGATCCTCTTGGCCTTCTGATTAAAACGGAAACAGAATTAACGGAG  700

seq1  AAATAGAAACATAGATATGGAAAAGATGAAACAAAACCAGGCACCTGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAACATAGATATGGAAAAGATGAAACAAAACCAGGCACCTGGAC  750

seq1  TTACCAATCAGACAAAGCCTCCACTCTCGGGGGTTGGGGGGGGGGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAATCAGACAAAGCCTCCACTCTCGGGGGTTGGGGGGGGGGG  796