BAC Information

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BAC

Clone NameB6Ng01-074P19
ChromosomeX (Build37)Y (Build37)
Map Location 109,007,508 - 109,008,624573,422 - 573,546
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePou3f4, Cylc1, LOC100042872, Rps6ka6, EG664791, D030011N01Rik
Downstream geneLOC100038989, Tex16, LOC622570, 4933403O08Rik, EG385407, Apool, Satl1, EG623341, 2010106E10Rik, Zfp711, Pof1b, LOC623412, EG623428
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074P19.bB6Ng01-074P19.g
ACCDH891684DH891685
length1,132232
definitionDH891684|Mus musculus domesticus DNA, BAC clone: B6Ng01-074P19, 5' end.DH891685|Mus musculus domesticus DNA, BAC clone: B6Ng01-074P19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,007,508 - 109,008,624)(573,422 - 573,546)
sequence
gaattcattaattctctttgttaaaccagacagcattggggggggggcat
gaaatccctggggaaccttttttccccccagtgaatatgggtattaattg
aaagcttgatttactttattgttgtcacttttagatgtttcctttcataa
aggattaaaaaaatatatgtgcatttacccaccatggcacgtctgtcacc
cacagcttcaataacgcttggtgcagaaaaaaaaaaaaaaaacaaaaaaa
aaaaaaacaaaaacgattttcaaatacgacacatctagggctgcaagacc
gtacaaaggaatataatttcagctttgtgtgaaatggaggctacccattg
agatttacagtgtccagggggtcaagggatgtggggtttgtgttttgttt
tgtttttctgtttttgtttttatgaccactcacactcccgtgaaacacag
gaatttctctctcagtgtgaaaacaggggcatttccatgggtctccttta
aagccacagcatctccgtccagcgcacgttaccacgggggaactacttga
actaatccgaagcatccgcggaacattgggtaactacaaaagaccctagt
tctagcctttcccgactcctccgcccccacccccgagtcaggccctcgat
tttatggtctggaaagcttaggacaaggagaagtagctttcccagagcct
ttaggacgggcgccgtcctccctttgactcgggtcccaaggaacggtctc
tttttattcgcgagtctggggccacctgttgctttccacttaagttttct
tcctccgctgccttcccgcgccctcggcgagtgccgtgggcgtgtgtttc
tggtggcgaggcttccgtcaggcgcctctgtcggcttttccgacagtttc
cggagggaagcgcaaagtttgcaggccgggttcctccccgccttgcaggg
gggcaagggttcaagtccgggggccggagggcgcgcgctgcgtacgtcct
ccggcgctccttcggcgagcagtccgtttacgtcacgttggacgctaggc
gaggttccccggcacgcgctgcccagtgacttgctactgcggcaggggtg
tcgacttcggcggaactctggggccggctgcc
tcacctgaggaatcctgaatggctgagaagcacctgaaaaaatgttcagc
atccttaattatcagggcaatgcaaatttaaacagccctgagattccatc
tcacaccagctccatatgtatcagaagatggcctagccggccatcagtgg
aaagagaggcccattggtcgtacaaactttatatgcctcagtacagggga
acatcagggccaagaagtgggagtgggtgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_109007508_109008624
seq2: B6Ng01-074P19.b_47_1178

seq1  GAATTCATTAATTCTCTTTGTTAAACCAGACAGCATTGGGGGGGGGGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAATTCTCTTTGTTAAACCAGACAGCATTGGGGGGGGGGCAT  50

seq1  GAAATCCCTGGGGAACCTTTTTTCCCCCCAGTGAATATGGGTATTAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCCTGGGGAACCTTTTTTCCCCCCAGTGAATATGGGTATTAATTG  100

seq1  AAAGCTTGATTTACTTTATTGTTGTCACTTTTAGATGTTTCCTTTCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTGATTTACTTTATTGTTGTCACTTTTAGATGTTTCCTTTCATAA  150

seq1  AGGATTAAAAAAATATATGTGCATTTACCCACCATGGCACGTCTGTCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAAAAAAATATATGTGCATTTACCCACCATGGCACGTCTGTCACC  200

seq1  CACAGCTTCAATAACGCTTGGTGCAGAAAAAAAAAAAAAAAACAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTTCAATAACGCTTGGTGCAGAAAAAAAAAAAAAAAACAAAAAAA  250

seq1  AAAAAAACAAAAACGATTTTCAGATACGACACATCTAGGGCTGCAAGACC  300
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAAAAACAAAAACGATTTTCAAATACGACACATCTAGGGCTGCAAGACC  300

seq1  GTACAAAGGAATATAATTTCAGCTTTGTGTGAAATGGAGGCTACCCATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAGGAATATAATTTCAGCTTTGTGTGAAATGGAGGCTACCCATTG  350

seq1  AGATTTACAGTGTCCAGGGGGTCAAGGGATGTGGGGTTTGTGTTTTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTACAGTGTCCAGGGGGTCAAGGGATGTGGGGTTTGTGTTTTGTTT  400

seq1  TGTTTTTCTGTTTTTGTTTTTATGACCACTCACACTCCCGTGAAACACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTGTTTTTGTTTTTATGACCACTCACACTCCCGTGAAACACAG  450

seq1  GAATTTCTCTCTCAGTGTGAAAACAGGGGCATTTCCATGGGTCTCCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCTCTCTCAGTGTGAAAACAGGGGCATTTCCATGGGTCTCCTTTA  500

seq1  AAGCCACAGCATCTCCGTCCAGCGCACGTTACCACGGGGGAACTACTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACAGCATCTCCGTCCAGCGCACGTTACCACGGGGGAACTACTTGA  550

seq1  ACTAATCCGAAGCATCCGCGGAACATTGGGTAACTACAAAAGACCCTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATCCGAAGCATCCGCGGAACATTGGGTAACTACAAAAGACCCTAGT  600

seq1  TCTAGCCTTTCCCGACTCCTCCGCCCCCACCCCCGAGTCAGGCCCTCGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCTTTCCCGACTCCTCCGCCCCCACCCCCGAGTCAGGCCCTCGAT  650

seq1  TTTATGGTCTGGAAAGCTTAGGACAAGGAGAAGTAGCTTTCCCAGAGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGTCTGGAAAGCTTAGGACAAGGAGAAGTAGCTTTCCCAGAGCCT  700

seq1  TTAGGACGGGCGCCGTCCTCCCTTTGACTCGGGTCCCAAGGAACGGTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACGGGCGCCGTCCTCCCTTTGACTCGGGTCCCAAGGAACGGTCTC  750

seq1  -TTTTATTCGCGAGTCTGGGGCCACCTGTTGCTTTCCACTTAAGTTTTCT  799
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTCGCGAGTCTGGGGCCACCTGTTGCTTTCCACTTAAGTTTTCT  800

seq1  TCCTCCGCTGCCTTCCCGCGCCCTCGGCGAGTGCCGTGGGCGTGTGTTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCGCTGCCTTCCCGCGCCCTCGGCGAGTGCCGTGGGCGTGTGTTTC  850

seq1  TGGTGGCGAGGC-TCCGTCAGGCGCC-CTGTCGGCTTTTCCGACAG-TTC  896
      |||||||||||| ||||||||||||| ||||||||||||||||||| |||
seq2  TGGTGGCGAGGCTTCCGTCAGGCGCCTCTGTCGGCTTTTCCGACAGTTTC  900

seq1  CGGAGGG-AGCGCAAAGTTTGCAGGCC-GGTTCCTCCCCGCC-TGCA-GG  942
      ||||||| ||||||||||||||||||| |||||||||||||| |||| ||
seq2  CGGAGGGAAGCGCAAAGTTTGCAGGCCGGGTTCCTCCCCGCCTTGCAGGG  950

seq1  GGGCAAGGG-TCAAG-CCGGGGGCCGGAGGCGCCGCGCTGCGCACG--CC  988
      ||||||||| ||||| ||||||||||||||   ||||||||| |||  | 
seq2  GGGCAAGGGTTCAAGTCCGGGGGCCGGAGGGCGCGCGCTGCGTACGTCCT  1000

seq1  CCCGCGCCCCTCCGCCGAGCAG-CCG-CTACGTCACGTCGACGGCAAGCG  1036
      || |||| ||| || ||||||| |||  |||||||||| |   || ||  
seq2  CCGGCGCTCCTTCGGCGAGCAGTCCGTTTACGTCACGTTGGACGCTAGGC  1050

seq1  GAGGTTCCCCGGCACGCGCCG-CCAGTTGCCTGCGAGCGCGGCCAGGGGT  1085
      ||||||||||||||||||| | |||||  | ||| |  |||| |||||||
seq2  GAGGTTCCCCGGCACGCGCTGCCCAGTGACTTGCTACTGCGG-CAGGGGT  1099

seq1  G-CGAC-GCGGCGGAGACTCCGGGGCCGGCTGCC  1117
      | ||||  ||||||| |||| |||||||||||||
seq2  GTCGACTTCGGCGGA-ACTCTGGGGCCGGCTGCC  1132

seq1: chrY_573422_573546
seq2: B6Ng01-074P19.g_182_306

seq1  AGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAAGAGA  50
      |||| ||||||||||||||||||||||||  |||||||| ||| ||||||
seq2  AGCTCCATATGTATCAGAAGATGGCCTAGCCGGCCATCAGTGGAAAGAGA  50

seq1  GGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAACACCAG  100
      ||||| |||||| | ||||||||||||||| ||||||||||||||| |||
seq2  GGCCCATTGGTCGTACAAACTTTATATGCCTCAGTACAGGGGAACATCAG  100

seq1  GGCCAAGAAGTGGGAGAAGGTGGGT  125
      ||||||||||||||||  |||||||
seq2  GGCCAAGAAGTGGGAGTGGGTGGGT  125